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Metabolism-associated molecular classification of uterine corpus endometrial carcinoma

Uterine corpus endometrial carcinoma (UCEC) is one of the most common gynecologic malignancies. Currently, for UCEC cancer, molecular classification based on metabolic gene characteristics is rarely established. Here, we describe the molecular subtype features of UCEC by classifying metabolism-relat...

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Autores principales: Zhao, Munan, Li, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9885131/
https://www.ncbi.nlm.nih.gov/pubmed/36726804
http://dx.doi.org/10.3389/fgene.2023.955466
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author Zhao, Munan
Li, Wei
author_facet Zhao, Munan
Li, Wei
author_sort Zhao, Munan
collection PubMed
description Uterine corpus endometrial carcinoma (UCEC) is one of the most common gynecologic malignancies. Currently, for UCEC cancer, molecular classification based on metabolic gene characteristics is rarely established. Here, we describe the molecular subtype features of UCEC by classifying metabolism-related gene profiles. Therefore, integrative analysis was performed on UCEC patients from the TCGA public database. Consensus clustering of RNA expression data on 2,752 previously reported metabolic genes identified two metabolic subtypes, namely, C1 and C2 subtypes. Two metabolic subtypes for prognostic characteristics, immune infiltration, genetic alteration, and responses to immunotherapy existed with distinct differences. Then, differentially expressed genes (DEGs) among the two metabolic subtypes were also clustered into two subclusters, and the aforementioned features were similar to the metabolic subtypes, supporting that the metabolism-relevant molecular classification is reliable. The results showed that the C1 subtype has high metabolic activity, high immunogenicity, high gene mutation, and a good prognosis. The C2 subtype has some features with low metabolic activity, low immunogenicity, high copy number variation (CNV) alteration, and poor prognosis. Finally, a model was identified, with three gene metabolism-related signatures, which can predict the prognosis. These findings of this study demonstrate a new classification in UCEC based on the metabolic pattern, thereby providing valuable information for understanding UCEC’s molecular characteristics.
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spelling pubmed-98851312023-01-31 Metabolism-associated molecular classification of uterine corpus endometrial carcinoma Zhao, Munan Li, Wei Front Genet Genetics Uterine corpus endometrial carcinoma (UCEC) is one of the most common gynecologic malignancies. Currently, for UCEC cancer, molecular classification based on metabolic gene characteristics is rarely established. Here, we describe the molecular subtype features of UCEC by classifying metabolism-related gene profiles. Therefore, integrative analysis was performed on UCEC patients from the TCGA public database. Consensus clustering of RNA expression data on 2,752 previously reported metabolic genes identified two metabolic subtypes, namely, C1 and C2 subtypes. Two metabolic subtypes for prognostic characteristics, immune infiltration, genetic alteration, and responses to immunotherapy existed with distinct differences. Then, differentially expressed genes (DEGs) among the two metabolic subtypes were also clustered into two subclusters, and the aforementioned features were similar to the metabolic subtypes, supporting that the metabolism-relevant molecular classification is reliable. The results showed that the C1 subtype has high metabolic activity, high immunogenicity, high gene mutation, and a good prognosis. The C2 subtype has some features with low metabolic activity, low immunogenicity, high copy number variation (CNV) alteration, and poor prognosis. Finally, a model was identified, with three gene metabolism-related signatures, which can predict the prognosis. These findings of this study demonstrate a new classification in UCEC based on the metabolic pattern, thereby providing valuable information for understanding UCEC’s molecular characteristics. Frontiers Media S.A. 2023-01-16 /pmc/articles/PMC9885131/ /pubmed/36726804 http://dx.doi.org/10.3389/fgene.2023.955466 Text en Copyright © 2023 Zhao and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zhao, Munan
Li, Wei
Metabolism-associated molecular classification of uterine corpus endometrial carcinoma
title Metabolism-associated molecular classification of uterine corpus endometrial carcinoma
title_full Metabolism-associated molecular classification of uterine corpus endometrial carcinoma
title_fullStr Metabolism-associated molecular classification of uterine corpus endometrial carcinoma
title_full_unstemmed Metabolism-associated molecular classification of uterine corpus endometrial carcinoma
title_short Metabolism-associated molecular classification of uterine corpus endometrial carcinoma
title_sort metabolism-associated molecular classification of uterine corpus endometrial carcinoma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9885131/
https://www.ncbi.nlm.nih.gov/pubmed/36726804
http://dx.doi.org/10.3389/fgene.2023.955466
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