Cargando…

Transferability of the PRS estimates for height and BMI obtained from the European ethnic groups to the Western Russian populations

Genetic data plays an increasingly important role in modern medicine. Decrease in the cost of sequencing with subsequent increase in imputation accuracy, and the accumulation of large amounts of high-quality genetic data enable the creation of polygenic risk scores (PRSs) to perform genotype–phenoty...

Descripción completa

Detalles Bibliográficos
Autores principales: Albert, E. A., Kondratieva, O. A., Baranova, E. E., Sagaydak, O. V., Belenikin, M. S., Zobkova, G. Y., Kuznetsova, E. S., Deviatkin, A. A., Zhurov, A. A., Karpulevich, E. A., Volchkov, P. Y., Vorontsova, M. V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9885218/
https://www.ncbi.nlm.nih.gov/pubmed/36726807
http://dx.doi.org/10.3389/fgene.2023.1086709
_version_ 1784879886790295552
author Albert, E. A.
Kondratieva, O. A.
Baranova, E. E.
Sagaydak, O. V.
Belenikin, M. S.
Zobkova, G. Y.
Kuznetsova, E. S.
Deviatkin, A. A.
Zhurov, A. A.
Karpulevich, E. A.
Volchkov, P. Y.
Vorontsova, M. V.
author_facet Albert, E. A.
Kondratieva, O. A.
Baranova, E. E.
Sagaydak, O. V.
Belenikin, M. S.
Zobkova, G. Y.
Kuznetsova, E. S.
Deviatkin, A. A.
Zhurov, A. A.
Karpulevich, E. A.
Volchkov, P. Y.
Vorontsova, M. V.
author_sort Albert, E. A.
collection PubMed
description Genetic data plays an increasingly important role in modern medicine. Decrease in the cost of sequencing with subsequent increase in imputation accuracy, and the accumulation of large amounts of high-quality genetic data enable the creation of polygenic risk scores (PRSs) to perform genotype–phenotype associations. The accuracy of phenotype prediction primarily depends on the overall trait heritability, Genome-wide association studies cohort size, and the similarity of genetic background between the base and the target cohort. Here we utilized 8,664 high coverage genomic samples collected across Russia by “Evogen”, a Russian biomedical company, to evaluate the predictive power of PRSs based on summary statistics established on cohorts of European ancestry for basic phenotypic traits, namely height and BMI. We have demonstrated that the PRSs calculated for selected traits in three distinct Russian populations, recapitulate the predictive power from the original studies. This is evidence that GWAS summary statistics calculated on cohorts of European ancestry are transferable onto at least some ethnic groups in Russia.
format Online
Article
Text
id pubmed-9885218
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-98852182023-01-31 Transferability of the PRS estimates for height and BMI obtained from the European ethnic groups to the Western Russian populations Albert, E. A. Kondratieva, O. A. Baranova, E. E. Sagaydak, O. V. Belenikin, M. S. Zobkova, G. Y. Kuznetsova, E. S. Deviatkin, A. A. Zhurov, A. A. Karpulevich, E. A. Volchkov, P. Y. Vorontsova, M. V. Front Genet Genetics Genetic data plays an increasingly important role in modern medicine. Decrease in the cost of sequencing with subsequent increase in imputation accuracy, and the accumulation of large amounts of high-quality genetic data enable the creation of polygenic risk scores (PRSs) to perform genotype–phenotype associations. The accuracy of phenotype prediction primarily depends on the overall trait heritability, Genome-wide association studies cohort size, and the similarity of genetic background between the base and the target cohort. Here we utilized 8,664 high coverage genomic samples collected across Russia by “Evogen”, a Russian biomedical company, to evaluate the predictive power of PRSs based on summary statistics established on cohorts of European ancestry for basic phenotypic traits, namely height and BMI. We have demonstrated that the PRSs calculated for selected traits in three distinct Russian populations, recapitulate the predictive power from the original studies. This is evidence that GWAS summary statistics calculated on cohorts of European ancestry are transferable onto at least some ethnic groups in Russia. Frontiers Media S.A. 2023-01-16 /pmc/articles/PMC9885218/ /pubmed/36726807 http://dx.doi.org/10.3389/fgene.2023.1086709 Text en Copyright © 2023 Albert, Kondratieva, Baranova, Sagaydak, Belenikin, Zobkova, Kuznetsova, Deviatkin, Zhurov, Karpulevich, Volchkov and Vorontsova. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Albert, E. A.
Kondratieva, O. A.
Baranova, E. E.
Sagaydak, O. V.
Belenikin, M. S.
Zobkova, G. Y.
Kuznetsova, E. S.
Deviatkin, A. A.
Zhurov, A. A.
Karpulevich, E. A.
Volchkov, P. Y.
Vorontsova, M. V.
Transferability of the PRS estimates for height and BMI obtained from the European ethnic groups to the Western Russian populations
title Transferability of the PRS estimates for height and BMI obtained from the European ethnic groups to the Western Russian populations
title_full Transferability of the PRS estimates for height and BMI obtained from the European ethnic groups to the Western Russian populations
title_fullStr Transferability of the PRS estimates for height and BMI obtained from the European ethnic groups to the Western Russian populations
title_full_unstemmed Transferability of the PRS estimates for height and BMI obtained from the European ethnic groups to the Western Russian populations
title_short Transferability of the PRS estimates for height and BMI obtained from the European ethnic groups to the Western Russian populations
title_sort transferability of the prs estimates for height and bmi obtained from the european ethnic groups to the western russian populations
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9885218/
https://www.ncbi.nlm.nih.gov/pubmed/36726807
http://dx.doi.org/10.3389/fgene.2023.1086709
work_keys_str_mv AT albertea transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT kondratievaoa transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT baranovaee transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT sagaydakov transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT belenikinms transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT zobkovagy transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT kuznetsovaes transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT deviatkinaa transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT zhurovaa transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT karpulevichea transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT volchkovpy transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations
AT vorontsovamv transferabilityoftheprsestimatesforheightandbmiobtainedfromtheeuropeanethnicgroupstothewesternrussianpopulations