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Digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling

Acid-base reactions are ubiquitous, easy to prepare, and execute without sophisticated equipment. Acids and bases are also inherently complementary and naturally map to a universal representation of “0” and “1.” Here, we propose how to leverage acids, bases, and their reactions to encode binary info...

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Autores principales: Agiza, Ahmed A., Oakley, Kady, Rosenstein, Jacob K., Rubenstein, Brenda M., Kim, Eunsuk, Riedel, Marc, Reda, Sherief
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9887006/
https://www.ncbi.nlm.nih.gov/pubmed/36717558
http://dx.doi.org/10.1038/s41467-023-36206-8
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author Agiza, Ahmed A.
Oakley, Kady
Rosenstein, Jacob K.
Rubenstein, Brenda M.
Kim, Eunsuk
Riedel, Marc
Reda, Sherief
author_facet Agiza, Ahmed A.
Oakley, Kady
Rosenstein, Jacob K.
Rubenstein, Brenda M.
Kim, Eunsuk
Riedel, Marc
Reda, Sherief
author_sort Agiza, Ahmed A.
collection PubMed
description Acid-base reactions are ubiquitous, easy to prepare, and execute without sophisticated equipment. Acids and bases are also inherently complementary and naturally map to a universal representation of “0” and “1.” Here, we propose how to leverage acids, bases, and their reactions to encode binary information and perform information processing based upon the majority and negation operations. These operations form a functionally complete set that we use to implement more complex computations such as digital circuits and neural networks. We present the building blocks needed to build complete digital circuits using acids and bases for dual-rail encoding data values as complementary pairs, including a set of primitive logic functions that are widely applicable to molecular computation. We demonstrate how to implement neural network classifiers and some classes of digital circuits with acid-base reactions orchestrated by a robotic fluid handling device. We validate the neural network experimentally on a number of images with different formats, resulting in a perfect match to the in-silico classifier. Additionally, the simulation of our acid-base classifier matches the results of the in-silico classifier with approximately 99% similarity.
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spelling pubmed-98870062023-02-01 Digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling Agiza, Ahmed A. Oakley, Kady Rosenstein, Jacob K. Rubenstein, Brenda M. Kim, Eunsuk Riedel, Marc Reda, Sherief Nat Commun Article Acid-base reactions are ubiquitous, easy to prepare, and execute without sophisticated equipment. Acids and bases are also inherently complementary and naturally map to a universal representation of “0” and “1.” Here, we propose how to leverage acids, bases, and their reactions to encode binary information and perform information processing based upon the majority and negation operations. These operations form a functionally complete set that we use to implement more complex computations such as digital circuits and neural networks. We present the building blocks needed to build complete digital circuits using acids and bases for dual-rail encoding data values as complementary pairs, including a set of primitive logic functions that are widely applicable to molecular computation. We demonstrate how to implement neural network classifiers and some classes of digital circuits with acid-base reactions orchestrated by a robotic fluid handling device. We validate the neural network experimentally on a number of images with different formats, resulting in a perfect match to the in-silico classifier. Additionally, the simulation of our acid-base classifier matches the results of the in-silico classifier with approximately 99% similarity. Nature Publishing Group UK 2023-01-30 /pmc/articles/PMC9887006/ /pubmed/36717558 http://dx.doi.org/10.1038/s41467-023-36206-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Agiza, Ahmed A.
Oakley, Kady
Rosenstein, Jacob K.
Rubenstein, Brenda M.
Kim, Eunsuk
Riedel, Marc
Reda, Sherief
Digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling
title Digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling
title_full Digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling
title_fullStr Digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling
title_full_unstemmed Digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling
title_short Digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling
title_sort digital circuits and neural networks based on acid-base chemistry implemented by robotic fluid handling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9887006/
https://www.ncbi.nlm.nih.gov/pubmed/36717558
http://dx.doi.org/10.1038/s41467-023-36206-8
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