The complete chloroplast genome sequence of Rubus irritans Focke 1910 (Rosaceae)

Rubus irritans Focke is a type of tonifying kidney-essence herb used in China. We present the complete chloroplast (cp) genome of R. irritans, a member of the genus Rubus. The complete cp genome of R. irritans was 155,286 bp long and consisted of an 84,613 bp long large single-copy (LSC) region, an...

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Autores principales: Han, YongXia, Tong, Li, Zhang, ZongHao, Yang, ShiBing, Yang, Fang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Plastome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9888452/
https://www.ncbi.nlm.nih.gov/pubmed/36733273
http://dx.doi.org/10.1080/23802359.2023.2168113
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author Han, YongXia
Tong, Li
Zhang, ZongHao
Yang, ShiBing
Yang, Fang
author_facet Han, YongXia
Tong, Li
Zhang, ZongHao
Yang, ShiBing
Yang, Fang
author_sort Han, YongXia
collection PubMed
description Rubus irritans Focke is a type of tonifying kidney-essence herb used in China. We present the complete chloroplast (cp) genome of R. irritans, a member of the genus Rubus. The complete cp genome of R. irritans was 155,286 bp long and consisted of an 84,613 bp long large single-copy (LSC) region, an 18,697 bp long SSC region, and a pair of 25,988 bp long inverted repeats (IR). Furthermore, the plastid genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the genome was 37.29%. Based on the complete cp genome, phylogenetic analysis revealed that R. irritans is closely related to R. amabilis.
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spelling pubmed-98884522023-02-01 The complete chloroplast genome sequence of Rubus irritans Focke 1910 (Rosaceae) Han, YongXia Tong, Li Zhang, ZongHao Yang, ShiBing Yang, Fang Mitochondrial DNA B Resour Plastome Announcement Rubus irritans Focke is a type of tonifying kidney-essence herb used in China. We present the complete chloroplast (cp) genome of R. irritans, a member of the genus Rubus. The complete cp genome of R. irritans was 155,286 bp long and consisted of an 84,613 bp long large single-copy (LSC) region, an 18,697 bp long SSC region, and a pair of 25,988 bp long inverted repeats (IR). Furthermore, the plastid genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the genome was 37.29%. Based on the complete cp genome, phylogenetic analysis revealed that R. irritans is closely related to R. amabilis. Taylor & Francis 2023-01-26 /pmc/articles/PMC9888452/ /pubmed/36733273 http://dx.doi.org/10.1080/23802359.2023.2168113 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Han, YongXia
Tong, Li
Zhang, ZongHao
Yang, ShiBing
Yang, Fang
The complete chloroplast genome sequence of Rubus irritans Focke 1910 (Rosaceae)
title The complete chloroplast genome sequence of Rubus irritans Focke 1910 (Rosaceae)
title_full The complete chloroplast genome sequence of Rubus irritans Focke 1910 (Rosaceae)
title_fullStr The complete chloroplast genome sequence of Rubus irritans Focke 1910 (Rosaceae)
title_full_unstemmed The complete chloroplast genome sequence of Rubus irritans Focke 1910 (Rosaceae)
title_short The complete chloroplast genome sequence of Rubus irritans Focke 1910 (Rosaceae)
title_sort complete chloroplast genome sequence of rubus irritans focke 1910 (rosaceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9888452/
https://www.ncbi.nlm.nih.gov/pubmed/36733273
http://dx.doi.org/10.1080/23802359.2023.2168113
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