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Identification of the Hub Genes Involved in Stem Cell Treatment for Intervertebral Disc Degeneration: A Conjoint Analysis of Single-Cell and Machine Learning

Intervertebral disc degeneration (IDD), which is distinguished by a variety of pathologic alterations, is the major cause of low back pain (LBP). Nonetheless, preventative measures or therapies that may delay IDD are scarcely available. In this study, we sought to identify new diagnostic biological...

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Autores principales: Chen, Jianfeng, Qi, Fuwei, Li, Guanshen, Deng, Qiaosong, Zhang, Chenlin, Li, Xiaojun, Zhang, Yafeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9889147/
https://www.ncbi.nlm.nih.gov/pubmed/36733465
http://dx.doi.org/10.1155/2023/7055264
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author Chen, Jianfeng
Qi, Fuwei
Li, Guanshen
Deng, Qiaosong
Zhang, Chenlin
Li, Xiaojun
Zhang, Yafeng
author_facet Chen, Jianfeng
Qi, Fuwei
Li, Guanshen
Deng, Qiaosong
Zhang, Chenlin
Li, Xiaojun
Zhang, Yafeng
author_sort Chen, Jianfeng
collection PubMed
description Intervertebral disc degeneration (IDD), which is distinguished by a variety of pathologic alterations, is the major cause of low back pain (LBP). Nonetheless, preventative measures or therapies that may delay IDD are scarcely available. In this study, we sought to identify new diagnostic biological markers for IDD. In this first-of-a-kind study combining machine learning, stem cell treatment samples and single-cell sequencing data were collected. Differentially expressed genes (DEGs) were detected from the treatment group and clusters. To filter potential markers, support vector machine analysis and LASSO were performed. LAPTM5 was found to be the hub gene for IDD. In addition, the results of single-cell sequencing demonstrated the critical function of stem cells in IDD. Finally, we found that aging is significantly associated with the rate of stem cells. In general, our results may offer fresh insights that may be used in the investigation of innovative markers for diagnosing IDD. The critical genes identified by the machine learning algorithm could provide new perspectives on IDD.
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spelling pubmed-98891472023-02-01 Identification of the Hub Genes Involved in Stem Cell Treatment for Intervertebral Disc Degeneration: A Conjoint Analysis of Single-Cell and Machine Learning Chen, Jianfeng Qi, Fuwei Li, Guanshen Deng, Qiaosong Zhang, Chenlin Li, Xiaojun Zhang, Yafeng Stem Cells Int Research Article Intervertebral disc degeneration (IDD), which is distinguished by a variety of pathologic alterations, is the major cause of low back pain (LBP). Nonetheless, preventative measures or therapies that may delay IDD are scarcely available. In this study, we sought to identify new diagnostic biological markers for IDD. In this first-of-a-kind study combining machine learning, stem cell treatment samples and single-cell sequencing data were collected. Differentially expressed genes (DEGs) were detected from the treatment group and clusters. To filter potential markers, support vector machine analysis and LASSO were performed. LAPTM5 was found to be the hub gene for IDD. In addition, the results of single-cell sequencing demonstrated the critical function of stem cells in IDD. Finally, we found that aging is significantly associated with the rate of stem cells. In general, our results may offer fresh insights that may be used in the investigation of innovative markers for diagnosing IDD. The critical genes identified by the machine learning algorithm could provide new perspectives on IDD. Hindawi 2023-01-24 /pmc/articles/PMC9889147/ /pubmed/36733465 http://dx.doi.org/10.1155/2023/7055264 Text en Copyright © 2023 Jianfeng Chen et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Chen, Jianfeng
Qi, Fuwei
Li, Guanshen
Deng, Qiaosong
Zhang, Chenlin
Li, Xiaojun
Zhang, Yafeng
Identification of the Hub Genes Involved in Stem Cell Treatment for Intervertebral Disc Degeneration: A Conjoint Analysis of Single-Cell and Machine Learning
title Identification of the Hub Genes Involved in Stem Cell Treatment for Intervertebral Disc Degeneration: A Conjoint Analysis of Single-Cell and Machine Learning
title_full Identification of the Hub Genes Involved in Stem Cell Treatment for Intervertebral Disc Degeneration: A Conjoint Analysis of Single-Cell and Machine Learning
title_fullStr Identification of the Hub Genes Involved in Stem Cell Treatment for Intervertebral Disc Degeneration: A Conjoint Analysis of Single-Cell and Machine Learning
title_full_unstemmed Identification of the Hub Genes Involved in Stem Cell Treatment for Intervertebral Disc Degeneration: A Conjoint Analysis of Single-Cell and Machine Learning
title_short Identification of the Hub Genes Involved in Stem Cell Treatment for Intervertebral Disc Degeneration: A Conjoint Analysis of Single-Cell and Machine Learning
title_sort identification of the hub genes involved in stem cell treatment for intervertebral disc degeneration: a conjoint analysis of single-cell and machine learning
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9889147/
https://www.ncbi.nlm.nih.gov/pubmed/36733465
http://dx.doi.org/10.1155/2023/7055264
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