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An integrated multi-omics analysis of sleep-disordered breathing traits implicates P2XR4 purinergic signaling

Sleep Disordered Breathing (SDB) is a common disease associated with increased risk for cardiometabolic, cardiovascular, and cognitive diseases. How SDB affects the molecular environment is still poorly understood. We study the association of three SDB measures with gene expression measured using RN...

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Autores principales: Kurniansyah, Nuzulul, Wallace, Danielle A., Zhang, Ying, Yu, Bing, Cade, Brian, Wang, Heming, Ochs-Balcom, Heather M., Reiner, Alexander P., Ramos, Alberto R., Smith, Joshua D., Cai, Jianwen, Daviglus, Martha, Zee, Phyllis C., Kaplan, Robert, Kooperberg, Charles, Rich, Stephen S., Rotter, Jerome I., Gharib, Sina A., Redline, Susan, Sofer, Tamar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9889381/
https://www.ncbi.nlm.nih.gov/pubmed/36721044
http://dx.doi.org/10.1038/s42003-023-04520-y
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author Kurniansyah, Nuzulul
Wallace, Danielle A.
Zhang, Ying
Yu, Bing
Cade, Brian
Wang, Heming
Ochs-Balcom, Heather M.
Reiner, Alexander P.
Ramos, Alberto R.
Smith, Joshua D.
Cai, Jianwen
Daviglus, Martha
Zee, Phyllis C.
Kaplan, Robert
Kooperberg, Charles
Rich, Stephen S.
Rotter, Jerome I.
Gharib, Sina A.
Redline, Susan
Sofer, Tamar
author_facet Kurniansyah, Nuzulul
Wallace, Danielle A.
Zhang, Ying
Yu, Bing
Cade, Brian
Wang, Heming
Ochs-Balcom, Heather M.
Reiner, Alexander P.
Ramos, Alberto R.
Smith, Joshua D.
Cai, Jianwen
Daviglus, Martha
Zee, Phyllis C.
Kaplan, Robert
Kooperberg, Charles
Rich, Stephen S.
Rotter, Jerome I.
Gharib, Sina A.
Redline, Susan
Sofer, Tamar
author_sort Kurniansyah, Nuzulul
collection PubMed
description Sleep Disordered Breathing (SDB) is a common disease associated with increased risk for cardiometabolic, cardiovascular, and cognitive diseases. How SDB affects the molecular environment is still poorly understood. We study the association of three SDB measures with gene expression measured using RNA-seq in multiple blood tissues from the Multi-Ethnic Study of Atherosclerosis. We develop genetic instrumental variables for the associated transcripts as polygenic risk scores (tPRS), then generalize and validate the tPRS in the Women’s Health Initiative. We measure the associations of the validated tPRS with SDB and serum metabolites in Hispanic Community Health Study/Study of Latinos. Here we find differential gene expression by blood cell type in relation to SDB traits and link P2XR4 expression to average oxyhemoglobin saturation during sleep and butyrylcarnitine (C4) levels. These findings can be used to develop interventions to alleviate the effect of SDB on the human molecular environment.
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spelling pubmed-98893812023-02-02 An integrated multi-omics analysis of sleep-disordered breathing traits implicates P2XR4 purinergic signaling Kurniansyah, Nuzulul Wallace, Danielle A. Zhang, Ying Yu, Bing Cade, Brian Wang, Heming Ochs-Balcom, Heather M. Reiner, Alexander P. Ramos, Alberto R. Smith, Joshua D. Cai, Jianwen Daviglus, Martha Zee, Phyllis C. Kaplan, Robert Kooperberg, Charles Rich, Stephen S. Rotter, Jerome I. Gharib, Sina A. Redline, Susan Sofer, Tamar Commun Biol Article Sleep Disordered Breathing (SDB) is a common disease associated with increased risk for cardiometabolic, cardiovascular, and cognitive diseases. How SDB affects the molecular environment is still poorly understood. We study the association of three SDB measures with gene expression measured using RNA-seq in multiple blood tissues from the Multi-Ethnic Study of Atherosclerosis. We develop genetic instrumental variables for the associated transcripts as polygenic risk scores (tPRS), then generalize and validate the tPRS in the Women’s Health Initiative. We measure the associations of the validated tPRS with SDB and serum metabolites in Hispanic Community Health Study/Study of Latinos. Here we find differential gene expression by blood cell type in relation to SDB traits and link P2XR4 expression to average oxyhemoglobin saturation during sleep and butyrylcarnitine (C4) levels. These findings can be used to develop interventions to alleviate the effect of SDB on the human molecular environment. Nature Publishing Group UK 2023-01-31 /pmc/articles/PMC9889381/ /pubmed/36721044 http://dx.doi.org/10.1038/s42003-023-04520-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kurniansyah, Nuzulul
Wallace, Danielle A.
Zhang, Ying
Yu, Bing
Cade, Brian
Wang, Heming
Ochs-Balcom, Heather M.
Reiner, Alexander P.
Ramos, Alberto R.
Smith, Joshua D.
Cai, Jianwen
Daviglus, Martha
Zee, Phyllis C.
Kaplan, Robert
Kooperberg, Charles
Rich, Stephen S.
Rotter, Jerome I.
Gharib, Sina A.
Redline, Susan
Sofer, Tamar
An integrated multi-omics analysis of sleep-disordered breathing traits implicates P2XR4 purinergic signaling
title An integrated multi-omics analysis of sleep-disordered breathing traits implicates P2XR4 purinergic signaling
title_full An integrated multi-omics analysis of sleep-disordered breathing traits implicates P2XR4 purinergic signaling
title_fullStr An integrated multi-omics analysis of sleep-disordered breathing traits implicates P2XR4 purinergic signaling
title_full_unstemmed An integrated multi-omics analysis of sleep-disordered breathing traits implicates P2XR4 purinergic signaling
title_short An integrated multi-omics analysis of sleep-disordered breathing traits implicates P2XR4 purinergic signaling
title_sort integrated multi-omics analysis of sleep-disordered breathing traits implicates p2xr4 purinergic signaling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9889381/
https://www.ncbi.nlm.nih.gov/pubmed/36721044
http://dx.doi.org/10.1038/s42003-023-04520-y
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