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Brief Report: Evaluating the Diagnostic Yield of Commercial Gene Panels in Autism

Autism is a prevalent neurodevelopmental condition, highly heterogenous in both genotype and phenotype. This communication adds to existing discussion of the heterogeneity of clinical sequencing tests, “gene panels”, marketed for application in autism. We evaluate the clinical utility of available g...

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Autores principales: Ní Ghrálaigh, Fiana, McCarthy, Ellen, Murphy, Daniel N., Gallagher, Louise, Lopez, Lorna M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9889490/
https://www.ncbi.nlm.nih.gov/pubmed/34994928
http://dx.doi.org/10.1007/s10803-021-05417-7
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author Ní Ghrálaigh, Fiana
McCarthy, Ellen
Murphy, Daniel N.
Gallagher, Louise
Lopez, Lorna M.
author_facet Ní Ghrálaigh, Fiana
McCarthy, Ellen
Murphy, Daniel N.
Gallagher, Louise
Lopez, Lorna M.
author_sort Ní Ghrálaigh, Fiana
collection PubMed
description Autism is a prevalent neurodevelopmental condition, highly heterogenous in both genotype and phenotype. This communication adds to existing discussion of the heterogeneity of clinical sequencing tests, “gene panels”, marketed for application in autism. We evaluate the clinical utility of available gene panels based on existing genetic evidence. We determine that diagnostic yields of these gene panels range from 0.22% to 10.02% and gene selection for the panels is variable in relevance, here measured as percentage overlap with SFARI Gene and ranging from 15.15% to 100%. We conclude that gene panels marketed for use in autism are currently of limited clinical utility, and that sequencing with greater coverage may be more appropriate. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10803-021-05417-7.
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spelling pubmed-98894902023-02-02 Brief Report: Evaluating the Diagnostic Yield of Commercial Gene Panels in Autism Ní Ghrálaigh, Fiana McCarthy, Ellen Murphy, Daniel N. Gallagher, Louise Lopez, Lorna M. J Autism Dev Disord Brief Report Autism is a prevalent neurodevelopmental condition, highly heterogenous in both genotype and phenotype. This communication adds to existing discussion of the heterogeneity of clinical sequencing tests, “gene panels”, marketed for application in autism. We evaluate the clinical utility of available gene panels based on existing genetic evidence. We determine that diagnostic yields of these gene panels range from 0.22% to 10.02% and gene selection for the panels is variable in relevance, here measured as percentage overlap with SFARI Gene and ranging from 15.15% to 100%. We conclude that gene panels marketed for use in autism are currently of limited clinical utility, and that sequencing with greater coverage may be more appropriate. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10803-021-05417-7. Springer US 2022-01-07 2023 /pmc/articles/PMC9889490/ /pubmed/34994928 http://dx.doi.org/10.1007/s10803-021-05417-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Brief Report
Ní Ghrálaigh, Fiana
McCarthy, Ellen
Murphy, Daniel N.
Gallagher, Louise
Lopez, Lorna M.
Brief Report: Evaluating the Diagnostic Yield of Commercial Gene Panels in Autism
title Brief Report: Evaluating the Diagnostic Yield of Commercial Gene Panels in Autism
title_full Brief Report: Evaluating the Diagnostic Yield of Commercial Gene Panels in Autism
title_fullStr Brief Report: Evaluating the Diagnostic Yield of Commercial Gene Panels in Autism
title_full_unstemmed Brief Report: Evaluating the Diagnostic Yield of Commercial Gene Panels in Autism
title_short Brief Report: Evaluating the Diagnostic Yield of Commercial Gene Panels in Autism
title_sort brief report: evaluating the diagnostic yield of commercial gene panels in autism
topic Brief Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9889490/
https://www.ncbi.nlm.nih.gov/pubmed/34994928
http://dx.doi.org/10.1007/s10803-021-05417-7
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