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Novel insights into the somatic proteome of Strongyloides stercoralis infective third-stage larvae
BACKGROUND: Strongyloidiasis is a neglected tropical disease affecting an estimated 600 million people, particularly in resource-limited settings. The infection can persist lifelong due to unusual auto-infective cycle of Strongyloides stercoralis. The lack of a diagnostic gold standard and limited k...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9890704/ https://www.ncbi.nlm.nih.gov/pubmed/36721249 http://dx.doi.org/10.1186/s13071-023-05675-7 |
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author | Dishnica, Klevia Piubelli, Chiara Manfredi, Marcello Kondaveeti, Ravi Teja Longoni, Silvia Stefania Degani, Monica Buonfrate, Dora Giorgetti, Alejandro Tiberti, Natalia |
author_facet | Dishnica, Klevia Piubelli, Chiara Manfredi, Marcello Kondaveeti, Ravi Teja Longoni, Silvia Stefania Degani, Monica Buonfrate, Dora Giorgetti, Alejandro Tiberti, Natalia |
author_sort | Dishnica, Klevia |
collection | PubMed |
description | BACKGROUND: Strongyloidiasis is a neglected tropical disease affecting an estimated 600 million people, particularly in resource-limited settings. The infection can persist lifelong due to unusual auto-infective cycle of Strongyloides stercoralis. The lack of a diagnostic gold standard and limited knowledge of the mechanisms underpinning this chronic infection are key issues in disease management. To date, only a few proteomics studies have been conducted to elucidate the molecular mechanisms associated with Strongyloides parasitism or to highlight novel immunological markers, with the result that our knowledge of S. stercoralis proteome remains limited. This study aims at expanding the characterization of S. stercoralis infective larvae (iL3) in order to further explore the mechanisms of parasitism and to highlight possible novel targets for serodiagnosis. METHODS: iL3 obtained from an infected subject were analysed by high-throughput tandem mass spectrometry. To achieve a more comprehensive characterization of the iL3 proteome we analysed the experimental dataset using an automatic search strategy combined with manual annotation, which included gene ontology (GO) analysis, InterPro annotation, assessment of the homology with Homo sapiens and other pathogens of clinical importance and B-cell epitope prediction. RESULTS: Our pipeline identified 430 S. stercoralis proteins, 187 (43%) of which were uncharacterized. Oxidoreductases and peptidases were amongst the most represented protein categories, as highlighted by molecular function GO analyses, while membrane and mitochondrial proteins were the most represented cellular component GO categories. A high proportion of proteins bearing the CAP, SCP or thioredoxin domain or belonging to cysteine-rich secretory, transthyretin-like or peptidase protein families were also identified. Additionally, we highlighted nine proteins displaying low homology with H. sapiens or other related pathogens and bearing amino acid sequences with immunogenic properties. CONCLUSIONS: Our comprehensive description and annotation of the S. stercoralis iL3 proteome contribute to expanding the ‘omics characterization of this parasite and provide experimental evidence on the most represented proteins associated with S. stercoralis parasitism, as inferred from genomic and transcriptomic data. Moreover, novel candidate immunogenic proteins to be evaluated as novel serological diagnostic markers are highlighted. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13071-023-05675-7. |
format | Online Article Text |
id | pubmed-9890704 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-98907042023-02-02 Novel insights into the somatic proteome of Strongyloides stercoralis infective third-stage larvae Dishnica, Klevia Piubelli, Chiara Manfredi, Marcello Kondaveeti, Ravi Teja Longoni, Silvia Stefania Degani, Monica Buonfrate, Dora Giorgetti, Alejandro Tiberti, Natalia Parasit Vectors Research BACKGROUND: Strongyloidiasis is a neglected tropical disease affecting an estimated 600 million people, particularly in resource-limited settings. The infection can persist lifelong due to unusual auto-infective cycle of Strongyloides stercoralis. The lack of a diagnostic gold standard and limited knowledge of the mechanisms underpinning this chronic infection are key issues in disease management. To date, only a few proteomics studies have been conducted to elucidate the molecular mechanisms associated with Strongyloides parasitism or to highlight novel immunological markers, with the result that our knowledge of S. stercoralis proteome remains limited. This study aims at expanding the characterization of S. stercoralis infective larvae (iL3) in order to further explore the mechanisms of parasitism and to highlight possible novel targets for serodiagnosis. METHODS: iL3 obtained from an infected subject were analysed by high-throughput tandem mass spectrometry. To achieve a more comprehensive characterization of the iL3 proteome we analysed the experimental dataset using an automatic search strategy combined with manual annotation, which included gene ontology (GO) analysis, InterPro annotation, assessment of the homology with Homo sapiens and other pathogens of clinical importance and B-cell epitope prediction. RESULTS: Our pipeline identified 430 S. stercoralis proteins, 187 (43%) of which were uncharacterized. Oxidoreductases and peptidases were amongst the most represented protein categories, as highlighted by molecular function GO analyses, while membrane and mitochondrial proteins were the most represented cellular component GO categories. A high proportion of proteins bearing the CAP, SCP or thioredoxin domain or belonging to cysteine-rich secretory, transthyretin-like or peptidase protein families were also identified. Additionally, we highlighted nine proteins displaying low homology with H. sapiens or other related pathogens and bearing amino acid sequences with immunogenic properties. CONCLUSIONS: Our comprehensive description and annotation of the S. stercoralis iL3 proteome contribute to expanding the ‘omics characterization of this parasite and provide experimental evidence on the most represented proteins associated with S. stercoralis parasitism, as inferred from genomic and transcriptomic data. Moreover, novel candidate immunogenic proteins to be evaluated as novel serological diagnostic markers are highlighted. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13071-023-05675-7. BioMed Central 2023-01-31 /pmc/articles/PMC9890704/ /pubmed/36721249 http://dx.doi.org/10.1186/s13071-023-05675-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Dishnica, Klevia Piubelli, Chiara Manfredi, Marcello Kondaveeti, Ravi Teja Longoni, Silvia Stefania Degani, Monica Buonfrate, Dora Giorgetti, Alejandro Tiberti, Natalia Novel insights into the somatic proteome of Strongyloides stercoralis infective third-stage larvae |
title | Novel insights into the somatic proteome of Strongyloides stercoralis infective third-stage larvae |
title_full | Novel insights into the somatic proteome of Strongyloides stercoralis infective third-stage larvae |
title_fullStr | Novel insights into the somatic proteome of Strongyloides stercoralis infective third-stage larvae |
title_full_unstemmed | Novel insights into the somatic proteome of Strongyloides stercoralis infective third-stage larvae |
title_short | Novel insights into the somatic proteome of Strongyloides stercoralis infective third-stage larvae |
title_sort | novel insights into the somatic proteome of strongyloides stercoralis infective third-stage larvae |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9890704/ https://www.ncbi.nlm.nih.gov/pubmed/36721249 http://dx.doi.org/10.1186/s13071-023-05675-7 |
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