Gos: a declarative library for interactive genomics visualization in Python

SUMMARY: Gos is a declarative Python library designed to create interactive multiscale visualizations of genomics and epigenomics data. It provides a consistent and simple interface to the flexible Gosling visualization grammar. Gos hides technical complexities involved with configuring web-based ge...

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Detalles Bibliográficos
Autores principales: Manz, Trevor, L’Yi, Sehi, Gehlenborg, Nils
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9891240/
https://www.ncbi.nlm.nih.gov/pubmed/36688709
http://dx.doi.org/10.1093/bioinformatics/btad050
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author Manz, Trevor
L’Yi, Sehi
Gehlenborg, Nils
author_facet Manz, Trevor
L’Yi, Sehi
Gehlenborg, Nils
author_sort Manz, Trevor
collection PubMed
description SUMMARY: Gos is a declarative Python library designed to create interactive multiscale visualizations of genomics and epigenomics data. It provides a consistent and simple interface to the flexible Gosling visualization grammar. Gos hides technical complexities involved with configuring web-based genome browsers and integrates seamlessly within computational notebooks environments to enable new interactive analysis workflows. AVAILABILITY AND IMPLEMENTATION: Gos is released under the MIT License and available on the Python Package Index (PyPI). The source code is publicly available on GitHub (https://github.com/gosling-lang/gos), and documentation with examples can be found at https://gosling-lang.github.io/gos.
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spelling pubmed-98912402023-02-02 Gos: a declarative library for interactive genomics visualization in Python Manz, Trevor L’Yi, Sehi Gehlenborg, Nils Bioinformatics Applications Note SUMMARY: Gos is a declarative Python library designed to create interactive multiscale visualizations of genomics and epigenomics data. It provides a consistent and simple interface to the flexible Gosling visualization grammar. Gos hides technical complexities involved with configuring web-based genome browsers and integrates seamlessly within computational notebooks environments to enable new interactive analysis workflows. AVAILABILITY AND IMPLEMENTATION: Gos is released under the MIT License and available on the Python Package Index (PyPI). The source code is publicly available on GitHub (https://github.com/gosling-lang/gos), and documentation with examples can be found at https://gosling-lang.github.io/gos. Oxford University Press 2023-01-23 /pmc/articles/PMC9891240/ /pubmed/36688709 http://dx.doi.org/10.1093/bioinformatics/btad050 Text en © The Author(s) 2023. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Manz, Trevor
L’Yi, Sehi
Gehlenborg, Nils
Gos: a declarative library for interactive genomics visualization in Python
title Gos: a declarative library for interactive genomics visualization in Python
title_full Gos: a declarative library for interactive genomics visualization in Python
title_fullStr Gos: a declarative library for interactive genomics visualization in Python
title_full_unstemmed Gos: a declarative library for interactive genomics visualization in Python
title_short Gos: a declarative library for interactive genomics visualization in Python
title_sort gos: a declarative library for interactive genomics visualization in python
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9891240/
https://www.ncbi.nlm.nih.gov/pubmed/36688709
http://dx.doi.org/10.1093/bioinformatics/btad050
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