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Multi-objective optimization determines when, which and how to fuse deep networks: An application to predict COVID-19 outcomes

The COVID-19 pandemic has caused millions of cases and deaths and the AI-related scientific community, after being involved with detecting COVID-19 signs in medical images, has been now directing the efforts towards the development of methods that can predict the progression of the disease. This tas...

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Detalles Bibliográficos
Autores principales: Guarrasi, Valerio, Soda, Paolo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier Ltd. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9892294/
https://www.ncbi.nlm.nih.gov/pubmed/36738713
http://dx.doi.org/10.1016/j.compbiomed.2023.106625
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author Guarrasi, Valerio
Soda, Paolo
author_facet Guarrasi, Valerio
Soda, Paolo
author_sort Guarrasi, Valerio
collection PubMed
description The COVID-19 pandemic has caused millions of cases and deaths and the AI-related scientific community, after being involved with detecting COVID-19 signs in medical images, has been now directing the efforts towards the development of methods that can predict the progression of the disease. This task is multimodal by its very nature and, recently, baseline results achieved on the publicly available AIforCOVID dataset have shown that chest X-ray scans and clinical information are useful to identify patients at risk of severe outcomes. While deep learning has shown superior performance in several medical fields, in most of the cases it considers unimodal data only. In this respect, when, which and how to fuse the different modalities is an open challenge in multimodal deep learning. To cope with these three questions here we present a novel approach optimizing the setup of a multimodal end-to-end model. It exploits Pareto multi-objective optimization working with a performance metric and the diversity score of multiple candidate unimodal neural networks to be fused. We test our method on the AIforCOVID dataset, attaining state-of-the-art results, not only outperforming the baseline performance but also being robust to external validation. Moreover, exploiting XAI algorithms we figure out a hierarchy among the modalities and we extract the features’ intra-modality importance, enriching the trust on the predictions made by the model.
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spelling pubmed-98922942023-02-02 Multi-objective optimization determines when, which and how to fuse deep networks: An application to predict COVID-19 outcomes Guarrasi, Valerio Soda, Paolo Comput Biol Med Article The COVID-19 pandemic has caused millions of cases and deaths and the AI-related scientific community, after being involved with detecting COVID-19 signs in medical images, has been now directing the efforts towards the development of methods that can predict the progression of the disease. This task is multimodal by its very nature and, recently, baseline results achieved on the publicly available AIforCOVID dataset have shown that chest X-ray scans and clinical information are useful to identify patients at risk of severe outcomes. While deep learning has shown superior performance in several medical fields, in most of the cases it considers unimodal data only. In this respect, when, which and how to fuse the different modalities is an open challenge in multimodal deep learning. To cope with these three questions here we present a novel approach optimizing the setup of a multimodal end-to-end model. It exploits Pareto multi-objective optimization working with a performance metric and the diversity score of multiple candidate unimodal neural networks to be fused. We test our method on the AIforCOVID dataset, attaining state-of-the-art results, not only outperforming the baseline performance but also being robust to external validation. Moreover, exploiting XAI algorithms we figure out a hierarchy among the modalities and we extract the features’ intra-modality importance, enriching the trust on the predictions made by the model. The Authors. Published by Elsevier Ltd. 2023-03 2023-02-02 /pmc/articles/PMC9892294/ /pubmed/36738713 http://dx.doi.org/10.1016/j.compbiomed.2023.106625 Text en © 2023 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Guarrasi, Valerio
Soda, Paolo
Multi-objective optimization determines when, which and how to fuse deep networks: An application to predict COVID-19 outcomes
title Multi-objective optimization determines when, which and how to fuse deep networks: An application to predict COVID-19 outcomes
title_full Multi-objective optimization determines when, which and how to fuse deep networks: An application to predict COVID-19 outcomes
title_fullStr Multi-objective optimization determines when, which and how to fuse deep networks: An application to predict COVID-19 outcomes
title_full_unstemmed Multi-objective optimization determines when, which and how to fuse deep networks: An application to predict COVID-19 outcomes
title_short Multi-objective optimization determines when, which and how to fuse deep networks: An application to predict COVID-19 outcomes
title_sort multi-objective optimization determines when, which and how to fuse deep networks: an application to predict covid-19 outcomes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9892294/
https://www.ncbi.nlm.nih.gov/pubmed/36738713
http://dx.doi.org/10.1016/j.compbiomed.2023.106625
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