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Improved prediction of new COVID-19 cases using a simple vector autoregressive model: evidence from seven New York state counties

With the rapid spread of COVID-19, there is an urgent need for a framework to accurately predict COVID-19 transmission. Recent epidemiological studies have found that a prominent feature of COVID-19 is its ability to be transmitted before symptoms occur, which is generally not the case for seasonal...

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Autores principales: Kitaoka, Takayoshi, Takahashi, Harutaka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9893212/
https://www.ncbi.nlm.nih.gov/pubmed/36741926
http://dx.doi.org/10.1093/biomethods/bpac035
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author Kitaoka, Takayoshi
Takahashi, Harutaka
author_facet Kitaoka, Takayoshi
Takahashi, Harutaka
author_sort Kitaoka, Takayoshi
collection PubMed
description With the rapid spread of COVID-19, there is an urgent need for a framework to accurately predict COVID-19 transmission. Recent epidemiological studies have found that a prominent feature of COVID-19 is its ability to be transmitted before symptoms occur, which is generally not the case for seasonal influenza and severe acute respiratory syndrome. Several COVID-19 predictive epidemiological models have been proposed; however, they share a common drawback – they are unable to capture the unique asymptomatic nature of COVID-19 transmission. Here, we propose vector autoregression (VAR) as an epidemiological county-level prediction model that captures this unique aspect of COVID-19 transmission by introducing newly infected cases in other counties as lagged explanatory variables. Using the number of new COVID-19 cases in seven New York State counties, we predicted new COVID-19 cases in the counties over the next 4 weeks. We then compared our prediction results with those of 11 other state-of-the-art prediction models proposed by leading research institutes and academic groups. The results showed that VAR prediction is superior to other epidemiological prediction models in terms of the root mean square error of prediction. Thus, we strongly recommend the simple VAR model as a framework to accurately predict COVID-19 transmission.
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spelling pubmed-98932122023-02-02 Improved prediction of new COVID-19 cases using a simple vector autoregressive model: evidence from seven New York state counties Kitaoka, Takayoshi Takahashi, Harutaka Biol Methods Protoc Methods Article With the rapid spread of COVID-19, there is an urgent need for a framework to accurately predict COVID-19 transmission. Recent epidemiological studies have found that a prominent feature of COVID-19 is its ability to be transmitted before symptoms occur, which is generally not the case for seasonal influenza and severe acute respiratory syndrome. Several COVID-19 predictive epidemiological models have been proposed; however, they share a common drawback – they are unable to capture the unique asymptomatic nature of COVID-19 transmission. Here, we propose vector autoregression (VAR) as an epidemiological county-level prediction model that captures this unique aspect of COVID-19 transmission by introducing newly infected cases in other counties as lagged explanatory variables. Using the number of new COVID-19 cases in seven New York State counties, we predicted new COVID-19 cases in the counties over the next 4 weeks. We then compared our prediction results with those of 11 other state-of-the-art prediction models proposed by leading research institutes and academic groups. The results showed that VAR prediction is superior to other epidemiological prediction models in terms of the root mean square error of prediction. Thus, we strongly recommend the simple VAR model as a framework to accurately predict COVID-19 transmission. Oxford University Press 2022-12-15 /pmc/articles/PMC9893212/ /pubmed/36741926 http://dx.doi.org/10.1093/biomethods/bpac035 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Methods Article
Kitaoka, Takayoshi
Takahashi, Harutaka
Improved prediction of new COVID-19 cases using a simple vector autoregressive model: evidence from seven New York state counties
title Improved prediction of new COVID-19 cases using a simple vector autoregressive model: evidence from seven New York state counties
title_full Improved prediction of new COVID-19 cases using a simple vector autoregressive model: evidence from seven New York state counties
title_fullStr Improved prediction of new COVID-19 cases using a simple vector autoregressive model: evidence from seven New York state counties
title_full_unstemmed Improved prediction of new COVID-19 cases using a simple vector autoregressive model: evidence from seven New York state counties
title_short Improved prediction of new COVID-19 cases using a simple vector autoregressive model: evidence from seven New York state counties
title_sort improved prediction of new covid-19 cases using a simple vector autoregressive model: evidence from seven new york state counties
topic Methods Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9893212/
https://www.ncbi.nlm.nih.gov/pubmed/36741926
http://dx.doi.org/10.1093/biomethods/bpac035
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