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An open source Python library for environmental isotopic modelling

Isotopic composition modelling is a key aspect in many environmental studies. This work presents Isocompy, an open source Python library that estimates isotopic compositions through machine learning algorithms with user-defined variables. Isocompy includes dataset preprocessing, outlier detection, s...

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Autores principales: Hassanzadeh, Ashkan, Valdivielso, Sonia, Vázquez-Suñé, Enric, Criollo, Rotman, Corbella, Mercè
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9895077/
https://www.ncbi.nlm.nih.gov/pubmed/36732615
http://dx.doi.org/10.1038/s41598-023-29073-2
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author Hassanzadeh, Ashkan
Valdivielso, Sonia
Vázquez-Suñé, Enric
Criollo, Rotman
Corbella, Mercè
author_facet Hassanzadeh, Ashkan
Valdivielso, Sonia
Vázquez-Suñé, Enric
Criollo, Rotman
Corbella, Mercè
author_sort Hassanzadeh, Ashkan
collection PubMed
description Isotopic composition modelling is a key aspect in many environmental studies. This work presents Isocompy, an open source Python library that estimates isotopic compositions through machine learning algorithms with user-defined variables. Isocompy includes dataset preprocessing, outlier detection, statistical analysis, feature selection, model validation and calibration and postprocessing. This tool has the flexibility to operate with discontinuous inputs in time and space. The automatic decision-making procedures are knitted in different stages of the algorithm, although it is possible to manually complete each step. The extensive output reports, figures and maps generated by Isocompy facilitate the comprehension of stable water isotope studies. The functionality of Isocompy is demonstrated with an application example involving the meteorological features and isotopic composition of precipitation in N Chile, which are compared with the results produced in previous studies. In essence, Isocompy offers an open source foundation for isotopic studies that ensures reproducible research in environmental fields.
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spelling pubmed-98950772023-02-04 An open source Python library for environmental isotopic modelling Hassanzadeh, Ashkan Valdivielso, Sonia Vázquez-Suñé, Enric Criollo, Rotman Corbella, Mercè Sci Rep Article Isotopic composition modelling is a key aspect in many environmental studies. This work presents Isocompy, an open source Python library that estimates isotopic compositions through machine learning algorithms with user-defined variables. Isocompy includes dataset preprocessing, outlier detection, statistical analysis, feature selection, model validation and calibration and postprocessing. This tool has the flexibility to operate with discontinuous inputs in time and space. The automatic decision-making procedures are knitted in different stages of the algorithm, although it is possible to manually complete each step. The extensive output reports, figures and maps generated by Isocompy facilitate the comprehension of stable water isotope studies. The functionality of Isocompy is demonstrated with an application example involving the meteorological features and isotopic composition of precipitation in N Chile, which are compared with the results produced in previous studies. In essence, Isocompy offers an open source foundation for isotopic studies that ensures reproducible research in environmental fields. Nature Publishing Group UK 2023-02-02 /pmc/articles/PMC9895077/ /pubmed/36732615 http://dx.doi.org/10.1038/s41598-023-29073-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Hassanzadeh, Ashkan
Valdivielso, Sonia
Vázquez-Suñé, Enric
Criollo, Rotman
Corbella, Mercè
An open source Python library for environmental isotopic modelling
title An open source Python library for environmental isotopic modelling
title_full An open source Python library for environmental isotopic modelling
title_fullStr An open source Python library for environmental isotopic modelling
title_full_unstemmed An open source Python library for environmental isotopic modelling
title_short An open source Python library for environmental isotopic modelling
title_sort open source python library for environmental isotopic modelling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9895077/
https://www.ncbi.nlm.nih.gov/pubmed/36732615
http://dx.doi.org/10.1038/s41598-023-29073-2
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