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YAP-mediated mechanotransduction in urinary bladder remodeling: Based on RNA-seq and CUT&Tag
Yes-associated protein (YAP) is an important transcriptional coactivator binding to transcriptional factors that engage in many downstream gene transcription. Partial bladder outlet obstruction (pBOO) causes a massive burden to patients and finally leads to bladder fibrosis. Several cell types engag...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9895788/ https://www.ncbi.nlm.nih.gov/pubmed/36741311 http://dx.doi.org/10.3389/fgene.2023.1106927 |
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author | Di, Xingpeng Xiang, Liyuan Jian, Zhongyu |
author_facet | Di, Xingpeng Xiang, Liyuan Jian, Zhongyu |
author_sort | Di, Xingpeng |
collection | PubMed |
description | Yes-associated protein (YAP) is an important transcriptional coactivator binding to transcriptional factors that engage in many downstream gene transcription. Partial bladder outlet obstruction (pBOO) causes a massive burden to patients and finally leads to bladder fibrosis. Several cell types engage in the pBOO pathological process, including urothelial cells, smooth muscle cells, and fibroblasts. To clarify the function of YAP in bladder fibrosis, we performed the RNA-seq and CUT&Tag of the bladder smooth muscle cell to analyze the YAP ablation of human bladder smooth muscle cells (hBdSMCs) and immunoprecipitation of YAP. 141 differentially expressed genes (DEGs) were identified through RNA-seq between YAP-knockdown and nature control. After matching with the results of CUT&Tag, 36 genes were regulated directly by YAP. Then we identified the hub genes in the DEGs, including CDCA5, CENPA, DTL, NCAPH, and NEIL3, that contribute to cell proliferation. Thus, our study provides a regulatory network of YAP in smooth muscle proliferation. The possible effects of YAP on hBdSMC might be a vital target for pBOO-associated bladder fibrosis. |
format | Online Article Text |
id | pubmed-9895788 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98957882023-02-04 YAP-mediated mechanotransduction in urinary bladder remodeling: Based on RNA-seq and CUT&Tag Di, Xingpeng Xiang, Liyuan Jian, Zhongyu Front Genet Genetics Yes-associated protein (YAP) is an important transcriptional coactivator binding to transcriptional factors that engage in many downstream gene transcription. Partial bladder outlet obstruction (pBOO) causes a massive burden to patients and finally leads to bladder fibrosis. Several cell types engage in the pBOO pathological process, including urothelial cells, smooth muscle cells, and fibroblasts. To clarify the function of YAP in bladder fibrosis, we performed the RNA-seq and CUT&Tag of the bladder smooth muscle cell to analyze the YAP ablation of human bladder smooth muscle cells (hBdSMCs) and immunoprecipitation of YAP. 141 differentially expressed genes (DEGs) were identified through RNA-seq between YAP-knockdown and nature control. After matching with the results of CUT&Tag, 36 genes were regulated directly by YAP. Then we identified the hub genes in the DEGs, including CDCA5, CENPA, DTL, NCAPH, and NEIL3, that contribute to cell proliferation. Thus, our study provides a regulatory network of YAP in smooth muscle proliferation. The possible effects of YAP on hBdSMC might be a vital target for pBOO-associated bladder fibrosis. Frontiers Media S.A. 2023-01-20 /pmc/articles/PMC9895788/ /pubmed/36741311 http://dx.doi.org/10.3389/fgene.2023.1106927 Text en Copyright © 2023 Di, Xiang and Jian. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Di, Xingpeng Xiang, Liyuan Jian, Zhongyu YAP-mediated mechanotransduction in urinary bladder remodeling: Based on RNA-seq and CUT&Tag |
title | YAP-mediated mechanotransduction in urinary bladder remodeling: Based on RNA-seq and CUT&Tag |
title_full | YAP-mediated mechanotransduction in urinary bladder remodeling: Based on RNA-seq and CUT&Tag |
title_fullStr | YAP-mediated mechanotransduction in urinary bladder remodeling: Based on RNA-seq and CUT&Tag |
title_full_unstemmed | YAP-mediated mechanotransduction in urinary bladder remodeling: Based on RNA-seq and CUT&Tag |
title_short | YAP-mediated mechanotransduction in urinary bladder remodeling: Based on RNA-seq and CUT&Tag |
title_sort | yap-mediated mechanotransduction in urinary bladder remodeling: based on rna-seq and cut&tag |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9895788/ https://www.ncbi.nlm.nih.gov/pubmed/36741311 http://dx.doi.org/10.3389/fgene.2023.1106927 |
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