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Learning local equivariant representations for large-scale atomistic dynamics
A simultaneously accurate and computationally efficient parametrization of the potential energy surface of molecules and materials is a long-standing goal in the natural sciences. While atom-centered message passing neural networks (MPNNs) have shown remarkable accuracy, their information propagatio...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9898554/ https://www.ncbi.nlm.nih.gov/pubmed/36737620 http://dx.doi.org/10.1038/s41467-023-36329-y |
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author | Musaelian, Albert Batzner, Simon Johansson, Anders Sun, Lixin Owen, Cameron J. Kornbluth, Mordechai Kozinsky, Boris |
author_facet | Musaelian, Albert Batzner, Simon Johansson, Anders Sun, Lixin Owen, Cameron J. Kornbluth, Mordechai Kozinsky, Boris |
author_sort | Musaelian, Albert |
collection | PubMed |
description | A simultaneously accurate and computationally efficient parametrization of the potential energy surface of molecules and materials is a long-standing goal in the natural sciences. While atom-centered message passing neural networks (MPNNs) have shown remarkable accuracy, their information propagation has limited the accessible length-scales. Local methods, conversely, scale to large simulations but have suffered from inferior accuracy. This work introduces Allegro, a strictly local equivariant deep neural network interatomic potential architecture that simultaneously exhibits excellent accuracy and scalability. Allegro represents a many-body potential using iterated tensor products of learned equivariant representations without atom-centered message passing. Allegro obtains improvements over state-of-the-art methods on QM9 and revMD17. A single tensor product layer outperforms existing deep MPNNs and transformers on QM9. Furthermore, Allegro displays remarkable generalization to out-of-distribution data. Molecular simulations using Allegro recover structural and kinetic properties of an amorphous electrolyte in excellent agreement with ab-initio simulations. Finally, we demonstrate parallelization with a simulation of 100 million atoms. |
format | Online Article Text |
id | pubmed-9898554 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-98985542023-02-05 Learning local equivariant representations for large-scale atomistic dynamics Musaelian, Albert Batzner, Simon Johansson, Anders Sun, Lixin Owen, Cameron J. Kornbluth, Mordechai Kozinsky, Boris Nat Commun Article A simultaneously accurate and computationally efficient parametrization of the potential energy surface of molecules and materials is a long-standing goal in the natural sciences. While atom-centered message passing neural networks (MPNNs) have shown remarkable accuracy, their information propagation has limited the accessible length-scales. Local methods, conversely, scale to large simulations but have suffered from inferior accuracy. This work introduces Allegro, a strictly local equivariant deep neural network interatomic potential architecture that simultaneously exhibits excellent accuracy and scalability. Allegro represents a many-body potential using iterated tensor products of learned equivariant representations without atom-centered message passing. Allegro obtains improvements over state-of-the-art methods on QM9 and revMD17. A single tensor product layer outperforms existing deep MPNNs and transformers on QM9. Furthermore, Allegro displays remarkable generalization to out-of-distribution data. Molecular simulations using Allegro recover structural and kinetic properties of an amorphous electrolyte in excellent agreement with ab-initio simulations. Finally, we demonstrate parallelization with a simulation of 100 million atoms. Nature Publishing Group UK 2023-02-03 /pmc/articles/PMC9898554/ /pubmed/36737620 http://dx.doi.org/10.1038/s41467-023-36329-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Musaelian, Albert Batzner, Simon Johansson, Anders Sun, Lixin Owen, Cameron J. Kornbluth, Mordechai Kozinsky, Boris Learning local equivariant representations for large-scale atomistic dynamics |
title | Learning local equivariant representations for large-scale atomistic dynamics |
title_full | Learning local equivariant representations for large-scale atomistic dynamics |
title_fullStr | Learning local equivariant representations for large-scale atomistic dynamics |
title_full_unstemmed | Learning local equivariant representations for large-scale atomistic dynamics |
title_short | Learning local equivariant representations for large-scale atomistic dynamics |
title_sort | learning local equivariant representations for large-scale atomistic dynamics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9898554/ https://www.ncbi.nlm.nih.gov/pubmed/36737620 http://dx.doi.org/10.1038/s41467-023-36329-y |
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