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Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development
Mango (Mangifera indica) fruit is known for its taste, health benefits, and drought tolerance. Potassium (K(+)) is one of the most abundant ions in a plant cell. It is important for various biological functions related to plant growth, development, and flowering/fruiting. It significantly contribute...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9899903/ https://www.ncbi.nlm.nih.gov/pubmed/36756234 http://dx.doi.org/10.3389/fpls.2022.1102201 |
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author | Tan, Lin Waqas, Muhammad Rehman, Abdul Rashid, Muhammad Abdul Rehman Fiaz, Sajid Manzoor, Hamid Azeem, Farrukh |
author_facet | Tan, Lin Waqas, Muhammad Rehman, Abdul Rashid, Muhammad Abdul Rehman Fiaz, Sajid Manzoor, Hamid Azeem, Farrukh |
author_sort | Tan, Lin |
collection | PubMed |
description | Mango (Mangifera indica) fruit is known for its taste, health benefits, and drought tolerance. Potassium (K(+)) is one of the most abundant ions in a plant cell. It is important for various biological functions related to plant growth, development, and flowering/fruiting. It significantly contributes to fruit yield, quality, and drought tolerance in plants. However, molecular mechanisms comprising K(+) transport in mango are least known. In the present study, 37 members of K(+) transport-related genes (PTGs) were identified in mango, which include 22 K(+) transporters (16 HAKs, 1 HKT, and 6 KEAs) and 15 K(+) channels (6 TPKs and 8 Shakers). All PTGs were predicted to be expressed at the plasma membrane and possess characteristic motifs and domains. Phylogenetic analysis identified a strong kinship of PTGs among Oryza sativa, Arabidopsis thaliana, Cicer arietinum, Malus domestica, and M. indica. The promoter analysis identified 60 types of cis-elements related to various biological processes. RNA-seq-based expression profiling identified that MiTPK1.2, MiHAK1, MiHAK2.1, HAK6.1, and MiAKT1.1 were most upregulated in roots and that MiKEA2, MiAKT2, and MiAKT1 were upregulated in leaves. Moreover, MiAKT6, MiHAK1.1, MiKAT2, MiKAT2.1, MiHKT1, MiTPK1.1, MiHAK7, and MiHAK12 were highly expressed during the five growth stages of mango fruit. The current study is the first comprehensive report on K(+) transport system in tropical fruits. Therefore, it will provide the foundation knowledge for the functional characterization of K(+) genes in mango and related plants. |
format | Online Article Text |
id | pubmed-9899903 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98999032023-02-07 Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development Tan, Lin Waqas, Muhammad Rehman, Abdul Rashid, Muhammad Abdul Rehman Fiaz, Sajid Manzoor, Hamid Azeem, Farrukh Front Plant Sci Plant Science Mango (Mangifera indica) fruit is known for its taste, health benefits, and drought tolerance. Potassium (K(+)) is one of the most abundant ions in a plant cell. It is important for various biological functions related to plant growth, development, and flowering/fruiting. It significantly contributes to fruit yield, quality, and drought tolerance in plants. However, molecular mechanisms comprising K(+) transport in mango are least known. In the present study, 37 members of K(+) transport-related genes (PTGs) were identified in mango, which include 22 K(+) transporters (16 HAKs, 1 HKT, and 6 KEAs) and 15 K(+) channels (6 TPKs and 8 Shakers). All PTGs were predicted to be expressed at the plasma membrane and possess characteristic motifs and domains. Phylogenetic analysis identified a strong kinship of PTGs among Oryza sativa, Arabidopsis thaliana, Cicer arietinum, Malus domestica, and M. indica. The promoter analysis identified 60 types of cis-elements related to various biological processes. RNA-seq-based expression profiling identified that MiTPK1.2, MiHAK1, MiHAK2.1, HAK6.1, and MiAKT1.1 were most upregulated in roots and that MiKEA2, MiAKT2, and MiAKT1 were upregulated in leaves. Moreover, MiAKT6, MiHAK1.1, MiKAT2, MiKAT2.1, MiHKT1, MiTPK1.1, MiHAK7, and MiHAK12 were highly expressed during the five growth stages of mango fruit. The current study is the first comprehensive report on K(+) transport system in tropical fruits. Therefore, it will provide the foundation knowledge for the functional characterization of K(+) genes in mango and related plants. Frontiers Media S.A. 2023-01-23 /pmc/articles/PMC9899903/ /pubmed/36756234 http://dx.doi.org/10.3389/fpls.2022.1102201 Text en Copyright © 2023 Tan, Waqas, Rehman, Rashid, Fiaz, Manzoor and Azeem https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Tan, Lin Waqas, Muhammad Rehman, Abdul Rashid, Muhammad Abdul Rehman Fiaz, Sajid Manzoor, Hamid Azeem, Farrukh Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development |
title | Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development |
title_full | Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development |
title_fullStr | Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development |
title_full_unstemmed | Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development |
title_short | Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development |
title_sort | computational analysis and expression profiling of potassium transport-related gene families in mango (mangifera indica) indicate their role in stress response and fruit development |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9899903/ https://www.ncbi.nlm.nih.gov/pubmed/36756234 http://dx.doi.org/10.3389/fpls.2022.1102201 |
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