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Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development

Mango (Mangifera indica) fruit is known for its taste, health benefits, and drought tolerance. Potassium (K(+)) is one of the most abundant ions in a plant cell. It is important for various biological functions related to plant growth, development, and flowering/fruiting. It significantly contribute...

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Autores principales: Tan, Lin, Waqas, Muhammad, Rehman, Abdul, Rashid, Muhammad Abdul Rehman, Fiaz, Sajid, Manzoor, Hamid, Azeem, Farrukh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9899903/
https://www.ncbi.nlm.nih.gov/pubmed/36756234
http://dx.doi.org/10.3389/fpls.2022.1102201
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author Tan, Lin
Waqas, Muhammad
Rehman, Abdul
Rashid, Muhammad Abdul Rehman
Fiaz, Sajid
Manzoor, Hamid
Azeem, Farrukh
author_facet Tan, Lin
Waqas, Muhammad
Rehman, Abdul
Rashid, Muhammad Abdul Rehman
Fiaz, Sajid
Manzoor, Hamid
Azeem, Farrukh
author_sort Tan, Lin
collection PubMed
description Mango (Mangifera indica) fruit is known for its taste, health benefits, and drought tolerance. Potassium (K(+)) is one of the most abundant ions in a plant cell. It is important for various biological functions related to plant growth, development, and flowering/fruiting. It significantly contributes to fruit yield, quality, and drought tolerance in plants. However, molecular mechanisms comprising K(+) transport in mango are least known. In the present study, 37 members of K(+) transport-related genes (PTGs) were identified in mango, which include 22 K(+) transporters (16 HAKs, 1 HKT, and 6 KEAs) and 15 K(+) channels (6 TPKs and 8 Shakers). All PTGs were predicted to be expressed at the plasma membrane and possess characteristic motifs and domains. Phylogenetic analysis identified a strong kinship of PTGs among Oryza sativa, Arabidopsis thaliana, Cicer arietinum, Malus domestica, and M. indica. The promoter analysis identified 60 types of cis-elements related to various biological processes. RNA-seq-based expression profiling identified that MiTPK1.2, MiHAK1, MiHAK2.1, HAK6.1, and MiAKT1.1 were most upregulated in roots and that MiKEA2, MiAKT2, and MiAKT1 were upregulated in leaves. Moreover, MiAKT6, MiHAK1.1, MiKAT2, MiKAT2.1, MiHKT1, MiTPK1.1, MiHAK7, and MiHAK12 were highly expressed during the five growth stages of mango fruit. The current study is the first comprehensive report on K(+) transport system in tropical fruits. Therefore, it will provide the foundation knowledge for the functional characterization of K(+) genes in mango and related plants.
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spelling pubmed-98999032023-02-07 Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development Tan, Lin Waqas, Muhammad Rehman, Abdul Rashid, Muhammad Abdul Rehman Fiaz, Sajid Manzoor, Hamid Azeem, Farrukh Front Plant Sci Plant Science Mango (Mangifera indica) fruit is known for its taste, health benefits, and drought tolerance. Potassium (K(+)) is one of the most abundant ions in a plant cell. It is important for various biological functions related to plant growth, development, and flowering/fruiting. It significantly contributes to fruit yield, quality, and drought tolerance in plants. However, molecular mechanisms comprising K(+) transport in mango are least known. In the present study, 37 members of K(+) transport-related genes (PTGs) were identified in mango, which include 22 K(+) transporters (16 HAKs, 1 HKT, and 6 KEAs) and 15 K(+) channels (6 TPKs and 8 Shakers). All PTGs were predicted to be expressed at the plasma membrane and possess characteristic motifs and domains. Phylogenetic analysis identified a strong kinship of PTGs among Oryza sativa, Arabidopsis thaliana, Cicer arietinum, Malus domestica, and M. indica. The promoter analysis identified 60 types of cis-elements related to various biological processes. RNA-seq-based expression profiling identified that MiTPK1.2, MiHAK1, MiHAK2.1, HAK6.1, and MiAKT1.1 were most upregulated in roots and that MiKEA2, MiAKT2, and MiAKT1 were upregulated in leaves. Moreover, MiAKT6, MiHAK1.1, MiKAT2, MiKAT2.1, MiHKT1, MiTPK1.1, MiHAK7, and MiHAK12 were highly expressed during the five growth stages of mango fruit. The current study is the first comprehensive report on K(+) transport system in tropical fruits. Therefore, it will provide the foundation knowledge for the functional characterization of K(+) genes in mango and related plants. Frontiers Media S.A. 2023-01-23 /pmc/articles/PMC9899903/ /pubmed/36756234 http://dx.doi.org/10.3389/fpls.2022.1102201 Text en Copyright © 2023 Tan, Waqas, Rehman, Rashid, Fiaz, Manzoor and Azeem https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Tan, Lin
Waqas, Muhammad
Rehman, Abdul
Rashid, Muhammad Abdul Rehman
Fiaz, Sajid
Manzoor, Hamid
Azeem, Farrukh
Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development
title Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development
title_full Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development
title_fullStr Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development
title_full_unstemmed Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development
title_short Computational analysis and expression profiling of potassium transport-related gene families in mango (Mangifera indica) indicate their role in stress response and fruit development
title_sort computational analysis and expression profiling of potassium transport-related gene families in mango (mangifera indica) indicate their role in stress response and fruit development
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9899903/
https://www.ncbi.nlm.nih.gov/pubmed/36756234
http://dx.doi.org/10.3389/fpls.2022.1102201
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