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Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities

Early detection of the COVID-19 virus is an important task for controlling the spread of the pandemic. Imaging techniques such as chest X-ray are relatively inexpensive and accessible, but its interpretation requires expert knowledge to evaluate the disease severity. Several approaches for automatic...

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Detalles Bibliográficos
Autores principales: Hernández, Sergio, López-Córtes, Xaviera
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer London 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9900537/
https://www.ncbi.nlm.nih.gov/pubmed/36778196
http://dx.doi.org/10.1007/s00521-023-08219-3
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author Hernández, Sergio
López-Córtes, Xaviera
author_facet Hernández, Sergio
López-Córtes, Xaviera
author_sort Hernández, Sergio
collection PubMed
description Early detection of the COVID-19 virus is an important task for controlling the spread of the pandemic. Imaging techniques such as chest X-ray are relatively inexpensive and accessible, but its interpretation requires expert knowledge to evaluate the disease severity. Several approaches for automatic COVID-19 detection using deep learning techniques have been proposed. While most approaches show high accuracy on the COVID-19 detection task, there is not enough evidence on external evaluation for this technique. Furthermore, data scarcity and sampling biases make difficult to properly evaluate model predictions. In this paper, we propose stochastic gradient Langevin dynamics (SGLD) to take into account the model uncertainty. Four different deep learning architectures are trained using SGLD and compared to their baselines using stochastic gradient descent. The model uncertainties are also evaluated according to their convergence properties and the leave-one-out predictive densities. The proposed approach is able to reduce overconfidence of the baseline estimators while also retaining predictive accuracy for the best-performing cases.
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spelling pubmed-99005372023-02-06 Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities Hernández, Sergio López-Córtes, Xaviera Neural Comput Appl Original Article Early detection of the COVID-19 virus is an important task for controlling the spread of the pandemic. Imaging techniques such as chest X-ray are relatively inexpensive and accessible, but its interpretation requires expert knowledge to evaluate the disease severity. Several approaches for automatic COVID-19 detection using deep learning techniques have been proposed. While most approaches show high accuracy on the COVID-19 detection task, there is not enough evidence on external evaluation for this technique. Furthermore, data scarcity and sampling biases make difficult to properly evaluate model predictions. In this paper, we propose stochastic gradient Langevin dynamics (SGLD) to take into account the model uncertainty. Four different deep learning architectures are trained using SGLD and compared to their baselines using stochastic gradient descent. The model uncertainties are also evaluated according to their convergence properties and the leave-one-out predictive densities. The proposed approach is able to reduce overconfidence of the baseline estimators while also retaining predictive accuracy for the best-performing cases. Springer London 2023-02-06 2023 /pmc/articles/PMC9900537/ /pubmed/36778196 http://dx.doi.org/10.1007/s00521-023-08219-3 Text en © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Hernández, Sergio
López-Córtes, Xaviera
Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities
title Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities
title_full Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities
title_fullStr Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities
title_full_unstemmed Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities
title_short Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities
title_sort evaluating deep learning predictions for covid-19 from x-ray images using leave-one-out predictive densities
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9900537/
https://www.ncbi.nlm.nih.gov/pubmed/36778196
http://dx.doi.org/10.1007/s00521-023-08219-3
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