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Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities
Early detection of the COVID-19 virus is an important task for controlling the spread of the pandemic. Imaging techniques such as chest X-ray are relatively inexpensive and accessible, but its interpretation requires expert knowledge to evaluate the disease severity. Several approaches for automatic...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer London
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9900537/ https://www.ncbi.nlm.nih.gov/pubmed/36778196 http://dx.doi.org/10.1007/s00521-023-08219-3 |
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author | Hernández, Sergio López-Córtes, Xaviera |
author_facet | Hernández, Sergio López-Córtes, Xaviera |
author_sort | Hernández, Sergio |
collection | PubMed |
description | Early detection of the COVID-19 virus is an important task for controlling the spread of the pandemic. Imaging techniques such as chest X-ray are relatively inexpensive and accessible, but its interpretation requires expert knowledge to evaluate the disease severity. Several approaches for automatic COVID-19 detection using deep learning techniques have been proposed. While most approaches show high accuracy on the COVID-19 detection task, there is not enough evidence on external evaluation for this technique. Furthermore, data scarcity and sampling biases make difficult to properly evaluate model predictions. In this paper, we propose stochastic gradient Langevin dynamics (SGLD) to take into account the model uncertainty. Four different deep learning architectures are trained using SGLD and compared to their baselines using stochastic gradient descent. The model uncertainties are also evaluated according to their convergence properties and the leave-one-out predictive densities. The proposed approach is able to reduce overconfidence of the baseline estimators while also retaining predictive accuracy for the best-performing cases. |
format | Online Article Text |
id | pubmed-9900537 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer London |
record_format | MEDLINE/PubMed |
spelling | pubmed-99005372023-02-06 Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities Hernández, Sergio López-Córtes, Xaviera Neural Comput Appl Original Article Early detection of the COVID-19 virus is an important task for controlling the spread of the pandemic. Imaging techniques such as chest X-ray are relatively inexpensive and accessible, but its interpretation requires expert knowledge to evaluate the disease severity. Several approaches for automatic COVID-19 detection using deep learning techniques have been proposed. While most approaches show high accuracy on the COVID-19 detection task, there is not enough evidence on external evaluation for this technique. Furthermore, data scarcity and sampling biases make difficult to properly evaluate model predictions. In this paper, we propose stochastic gradient Langevin dynamics (SGLD) to take into account the model uncertainty. Four different deep learning architectures are trained using SGLD and compared to their baselines using stochastic gradient descent. The model uncertainties are also evaluated according to their convergence properties and the leave-one-out predictive densities. The proposed approach is able to reduce overconfidence of the baseline estimators while also retaining predictive accuracy for the best-performing cases. Springer London 2023-02-06 2023 /pmc/articles/PMC9900537/ /pubmed/36778196 http://dx.doi.org/10.1007/s00521-023-08219-3 Text en © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Original Article Hernández, Sergio López-Córtes, Xaviera Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities |
title | Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities |
title_full | Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities |
title_fullStr | Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities |
title_full_unstemmed | Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities |
title_short | Evaluating deep learning predictions for COVID-19 from X-ray images using leave-one-out predictive densities |
title_sort | evaluating deep learning predictions for covid-19 from x-ray images using leave-one-out predictive densities |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9900537/ https://www.ncbi.nlm.nih.gov/pubmed/36778196 http://dx.doi.org/10.1007/s00521-023-08219-3 |
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