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Distinction of Male and Female Trees of Ginkgo biloba Using LAMP

Ginkgo biloba is utilized as food, medicine, wood, and street trees among other things. The objective of this study was to develop a loop-mediated isothermal amplification (LAMP) assay for gender distinction of G. biloba. Male-specific SCAR gene can be utilized to identify G. biloba gender using LAM...

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Autores principales: Lee, Jin-Pyo, Woo, Joo-Ah, Shin, Woo-Ri, Park, Yoon Shin, Kim, Hye Kwon, Ahn, Ji-Young, Kim, Yang-Hoon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9901403/
https://www.ncbi.nlm.nih.gov/pubmed/36745281
http://dx.doi.org/10.1007/s12033-023-00673-7
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author Lee, Jin-Pyo
Woo, Joo-Ah
Shin, Woo-Ri
Park, Yoon Shin
Kim, Hye Kwon
Ahn, Ji-Young
Kim, Yang-Hoon
author_facet Lee, Jin-Pyo
Woo, Joo-Ah
Shin, Woo-Ri
Park, Yoon Shin
Kim, Hye Kwon
Ahn, Ji-Young
Kim, Yang-Hoon
author_sort Lee, Jin-Pyo
collection PubMed
description Ginkgo biloba is utilized as food, medicine, wood, and street trees among other things. The objective of this study was to develop a loop-mediated isothermal amplification (LAMP) assay for gender distinction of G. biloba. Male-specific SCAR gene can be utilized to identify G. biloba gender using LAMP. The optimized LAMP conditions, temperature 60 °C, 2-mM MgSO(4), and [F3/B3]:[FIP/BIP] primer ratio of 1:4 were selected as final conditions. The G. biloba SCAR LAMP displayed a sensitivity of 10 ng when amplified by concentration under the optimum conditions. Additionally, it demonstrated a particular response in male with SYBR Green I in LAMP analysis that can be a more powerful tool for field and scale-up applications. Our work represents a first attempt to identify G. biloba gender using LAMP and offers an efficient and reliable tool for roadside landscaping. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12033-023-00673-7.
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spelling pubmed-99014032023-02-07 Distinction of Male and Female Trees of Ginkgo biloba Using LAMP Lee, Jin-Pyo Woo, Joo-Ah Shin, Woo-Ri Park, Yoon Shin Kim, Hye Kwon Ahn, Ji-Young Kim, Yang-Hoon Mol Biotechnol Original Paper Ginkgo biloba is utilized as food, medicine, wood, and street trees among other things. The objective of this study was to develop a loop-mediated isothermal amplification (LAMP) assay for gender distinction of G. biloba. Male-specific SCAR gene can be utilized to identify G. biloba gender using LAMP. The optimized LAMP conditions, temperature 60 °C, 2-mM MgSO(4), and [F3/B3]:[FIP/BIP] primer ratio of 1:4 were selected as final conditions. The G. biloba SCAR LAMP displayed a sensitivity of 10 ng when amplified by concentration under the optimum conditions. Additionally, it demonstrated a particular response in male with SYBR Green I in LAMP analysis that can be a more powerful tool for field and scale-up applications. Our work represents a first attempt to identify G. biloba gender using LAMP and offers an efficient and reliable tool for roadside landscaping. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12033-023-00673-7. Springer US 2023-02-06 /pmc/articles/PMC9901403/ /pubmed/36745281 http://dx.doi.org/10.1007/s12033-023-00673-7 Text en © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Paper
Lee, Jin-Pyo
Woo, Joo-Ah
Shin, Woo-Ri
Park, Yoon Shin
Kim, Hye Kwon
Ahn, Ji-Young
Kim, Yang-Hoon
Distinction of Male and Female Trees of Ginkgo biloba Using LAMP
title Distinction of Male and Female Trees of Ginkgo biloba Using LAMP
title_full Distinction of Male and Female Trees of Ginkgo biloba Using LAMP
title_fullStr Distinction of Male and Female Trees of Ginkgo biloba Using LAMP
title_full_unstemmed Distinction of Male and Female Trees of Ginkgo biloba Using LAMP
title_short Distinction of Male and Female Trees of Ginkgo biloba Using LAMP
title_sort distinction of male and female trees of ginkgo biloba using lamp
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9901403/
https://www.ncbi.nlm.nih.gov/pubmed/36745281
http://dx.doi.org/10.1007/s12033-023-00673-7
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