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Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis
In this study, we sequenced, annotated, and characterized the mitogenome of Tanichthys albiventris for the first time. The complete mitogenome is 16,544 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes. We found nine genetic overlaps and...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9901433/ https://www.ncbi.nlm.nih.gov/pubmed/36755877 http://dx.doi.org/10.1080/23802359.2023.2171244 |
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author | Yang, Tiezhu Tan, Chenxi Sun, Wenhao Li, Dongpu Zhao, Liangjie Li, Fan |
author_facet | Yang, Tiezhu Tan, Chenxi Sun, Wenhao Li, Dongpu Zhao, Liangjie Li, Fan |
author_sort | Yang, Tiezhu |
collection | PubMed |
description | In this study, we sequenced, annotated, and characterized the mitogenome of Tanichthys albiventris for the first time. The complete mitogenome is 16,544 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes. We found nine genetic overlaps and 17 intergenic spacer regions throughout the mitogenome of T. albiventris. The A + T content of the mitogenome is 60.93%. All PCGs have the same start codon of the standard ATG, excepting for that of cytochrome c oxidase 1 (cox1) which is the GTG. A phylogenetic analysis with another 15 species of the Cyprinidae was performed using MrBayes and IQtree, based on the amino acid sequences of 13 mitochondrial PCGs. The results indicated that T. albiventris shares a close ancestry with Tanichthys albonubes. |
format | Online Article Text |
id | pubmed-9901433 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-99014332023-02-07 Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis Yang, Tiezhu Tan, Chenxi Sun, Wenhao Li, Dongpu Zhao, Liangjie Li, Fan Mitochondrial DNA B Resour Mitogenome Announcement In this study, we sequenced, annotated, and characterized the mitogenome of Tanichthys albiventris for the first time. The complete mitogenome is 16,544 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNA genes, and two ribosomal RNA genes. We found nine genetic overlaps and 17 intergenic spacer regions throughout the mitogenome of T. albiventris. The A + T content of the mitogenome is 60.93%. All PCGs have the same start codon of the standard ATG, excepting for that of cytochrome c oxidase 1 (cox1) which is the GTG. A phylogenetic analysis with another 15 species of the Cyprinidae was performed using MrBayes and IQtree, based on the amino acid sequences of 13 mitochondrial PCGs. The results indicated that T. albiventris shares a close ancestry with Tanichthys albonubes. Taylor & Francis 2023-02-02 /pmc/articles/PMC9901433/ /pubmed/36755877 http://dx.doi.org/10.1080/23802359.2023.2171244 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yang, Tiezhu Tan, Chenxi Sun, Wenhao Li, Dongpu Zhao, Liangjie Li, Fan Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
title | Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
title_full | Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
title_fullStr | Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
title_full_unstemmed | Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
title_short | Characterization of the complete mitochondrial genome sequence of Tanichthys albiventris and phylogenetic analysis |
title_sort | characterization of the complete mitochondrial genome sequence of tanichthys albiventris and phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9901433/ https://www.ncbi.nlm.nih.gov/pubmed/36755877 http://dx.doi.org/10.1080/23802359.2023.2171244 |
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