Assembly and phylogenetic analysis of the complete mitogenome of Devario interruptus (Teleostei, Cypriniformes, Danionidae)

The complete mitochondrial DNA genome of Devario interruptus was sequenced on the Illumina HiSeq platform and found to be 16,735 bp and included 37 genes encoding 13 proteins, 22 tRNAs, two rRNAs, and two non-coding regions. The proportion of nucleotides in mitochondrial genome was T (27.9%), C (23....

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Autores principales: Chen, Xiao Jiang, Liu, Wen Zhao, Song, Lin, Liu, Hai Xia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
MitoGenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9901436/
https://www.ncbi.nlm.nih.gov/pubmed/36755879
http://dx.doi.org/10.1080/23802359.2022.2151831
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author Chen, Xiao Jiang
Liu, Wen Zhao
Song, Lin
Liu, Hai Xia
author_facet Chen, Xiao Jiang
Liu, Wen Zhao
Song, Lin
Liu, Hai Xia
author_sort Chen, Xiao Jiang
collection PubMed
description The complete mitochondrial DNA genome of Devario interruptus was sequenced on the Illumina HiSeq platform and found to be 16,735 bp and included 37 genes encoding 13 proteins, 22 tRNAs, two rRNAs, and two non-coding regions. The proportion of nucleotides in mitochondrial genome was T (27.9%), C (23.7%), A (33%), G (15.4%), and the deviation of AT was 60.9%. A Maximum-Likelihood phylogenetic tree was reconstructed using the concatenated mitochondrial protein-coding genes of D. interruptus and other 18 species of fishes. Phylogenetic analysis results supported that D. interruptus was closely related to Devario shanensis. Fundamental genetic data of D. interruptus will be essential for further genetic studies.
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spelling pubmed-99014362023-02-07 Assembly and phylogenetic analysis of the complete mitogenome of Devario interruptus (Teleostei, Cypriniformes, Danionidae) Chen, Xiao Jiang Liu, Wen Zhao Song, Lin Liu, Hai Xia Mitochondrial DNA B Resour MitoGenome Announcement The complete mitochondrial DNA genome of Devario interruptus was sequenced on the Illumina HiSeq platform and found to be 16,735 bp and included 37 genes encoding 13 proteins, 22 tRNAs, two rRNAs, and two non-coding regions. The proportion of nucleotides in mitochondrial genome was T (27.9%), C (23.7%), A (33%), G (15.4%), and the deviation of AT was 60.9%. A Maximum-Likelihood phylogenetic tree was reconstructed using the concatenated mitochondrial protein-coding genes of D. interruptus and other 18 species of fishes. Phylogenetic analysis results supported that D. interruptus was closely related to Devario shanensis. Fundamental genetic data of D. interruptus will be essential for further genetic studies. Taylor & Francis 2023-02-03 /pmc/articles/PMC9901436/ /pubmed/36755879 http://dx.doi.org/10.1080/23802359.2022.2151831 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle MitoGenome Announcement
Chen, Xiao Jiang
Liu, Wen Zhao
Song, Lin
Liu, Hai Xia
Assembly and phylogenetic analysis of the complete mitogenome of Devario interruptus (Teleostei, Cypriniformes, Danionidae)
title Assembly and phylogenetic analysis of the complete mitogenome of Devario interruptus (Teleostei, Cypriniformes, Danionidae)
title_full Assembly and phylogenetic analysis of the complete mitogenome of Devario interruptus (Teleostei, Cypriniformes, Danionidae)
title_fullStr Assembly and phylogenetic analysis of the complete mitogenome of Devario interruptus (Teleostei, Cypriniformes, Danionidae)
title_full_unstemmed Assembly and phylogenetic analysis of the complete mitogenome of Devario interruptus (Teleostei, Cypriniformes, Danionidae)
title_short Assembly and phylogenetic analysis of the complete mitogenome of Devario interruptus (Teleostei, Cypriniformes, Danionidae)
title_sort assembly and phylogenetic analysis of the complete mitogenome of devario interruptus (teleostei, cypriniformes, danionidae)
topic MitoGenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9901436/
https://www.ncbi.nlm.nih.gov/pubmed/36755879
http://dx.doi.org/10.1080/23802359.2022.2151831
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