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High-precision automatic identification method for dicentric chromosome images using two-stage convolutional neural network
Dicentric chromosome analysis is the gold standard for biological dose assessment. To enhance the efficiency of biological dose assessment in large-scale radiation catastrophes, automatic identification of dicentric chromosome images is a promising and objective method. In this paper, an automatic i...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9902391/ https://www.ncbi.nlm.nih.gov/pubmed/36746997 http://dx.doi.org/10.1038/s41598-023-28456-9 |
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author | Shen, Xiang Ma, Tengfei Li, Chaowen Wen, Zhanbo Zheng, Jinlin Zhou, Zhenggan |
author_facet | Shen, Xiang Ma, Tengfei Li, Chaowen Wen, Zhanbo Zheng, Jinlin Zhou, Zhenggan |
author_sort | Shen, Xiang |
collection | PubMed |
description | Dicentric chromosome analysis is the gold standard for biological dose assessment. To enhance the efficiency of biological dose assessment in large-scale radiation catastrophes, automatic identification of dicentric chromosome images is a promising and objective method. In this paper, an automatic identification method for dicentric chromosome images using two-stage convolutional neural network is proposed based on Giemsa-stained automatic microscopic imaging. To automatically segment the adhesive chromosome masses, a k-means based adaptive image segmentation and watershed segmentation algorithm is applied. The first-stage CNN is used to identify the dicentric chromosome images from all the images and the second-stage CNN works to specifically identify the dicentric chromosome images. This two-stage CNN identification method can effectively detects chromosome images with concealed centromeres, poorly expanded and long-armed entangled chromosomes, and tricentric chromosomes. The novel two-stage CNN method has a chromosome identification accuracy of 99.4%, a sensitivity of 85.8% sensitivity, and a specificity of 99.6%, effectively reducing the false positive rate of dicentric chromosome. The analysis speed of this automatic identification method can be 20 times quicker than manual detection, providing a valuable reference for other image identification situations with small target rates. |
format | Online Article Text |
id | pubmed-9902391 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-99023912023-02-08 High-precision automatic identification method for dicentric chromosome images using two-stage convolutional neural network Shen, Xiang Ma, Tengfei Li, Chaowen Wen, Zhanbo Zheng, Jinlin Zhou, Zhenggan Sci Rep Article Dicentric chromosome analysis is the gold standard for biological dose assessment. To enhance the efficiency of biological dose assessment in large-scale radiation catastrophes, automatic identification of dicentric chromosome images is a promising and objective method. In this paper, an automatic identification method for dicentric chromosome images using two-stage convolutional neural network is proposed based on Giemsa-stained automatic microscopic imaging. To automatically segment the adhesive chromosome masses, a k-means based adaptive image segmentation and watershed segmentation algorithm is applied. The first-stage CNN is used to identify the dicentric chromosome images from all the images and the second-stage CNN works to specifically identify the dicentric chromosome images. This two-stage CNN identification method can effectively detects chromosome images with concealed centromeres, poorly expanded and long-armed entangled chromosomes, and tricentric chromosomes. The novel two-stage CNN method has a chromosome identification accuracy of 99.4%, a sensitivity of 85.8% sensitivity, and a specificity of 99.6%, effectively reducing the false positive rate of dicentric chromosome. The analysis speed of this automatic identification method can be 20 times quicker than manual detection, providing a valuable reference for other image identification situations with small target rates. Nature Publishing Group UK 2023-02-06 /pmc/articles/PMC9902391/ /pubmed/36746997 http://dx.doi.org/10.1038/s41598-023-28456-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Shen, Xiang Ma, Tengfei Li, Chaowen Wen, Zhanbo Zheng, Jinlin Zhou, Zhenggan High-precision automatic identification method for dicentric chromosome images using two-stage convolutional neural network |
title | High-precision automatic identification method for dicentric chromosome images using two-stage convolutional neural network |
title_full | High-precision automatic identification method for dicentric chromosome images using two-stage convolutional neural network |
title_fullStr | High-precision automatic identification method for dicentric chromosome images using two-stage convolutional neural network |
title_full_unstemmed | High-precision automatic identification method for dicentric chromosome images using two-stage convolutional neural network |
title_short | High-precision automatic identification method for dicentric chromosome images using two-stage convolutional neural network |
title_sort | high-precision automatic identification method for dicentric chromosome images using two-stage convolutional neural network |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9902391/ https://www.ncbi.nlm.nih.gov/pubmed/36746997 http://dx.doi.org/10.1038/s41598-023-28456-9 |
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