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Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work
[Image: see text] The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry since its inception 20 years ago. H...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903322/ https://www.ncbi.nlm.nih.gov/pubmed/36626722 http://dx.doi.org/10.1021/acs.jproteome.2c00637 |
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author | Deutsch, Eric W. Vizcaíno, Juan Antonio Jones, Andrew R. Binz, Pierre-Alain Lam, Henry Klein, Joshua Bittremieux, Wout Perez-Riverol, Yasset Tabb, David L. Walzer, Mathias Ricard-Blum, Sylvie Hermjakob, Henning Neumann, Steffen Mak, Tytus D. Kawano, Shin Mendoza, Luis Van Den Bossche, Tim Gabriels, Ralf Bandeira, Nuno Carver, Jeremy Pullman, Benjamin Sun, Zhi Hoffmann, Nils Shofstahl, Jim Zhu, Yunping Licata, Luana Quaglia, Federica Tosatto, Silvio C. E. Orchard, Sandra E. |
author_facet | Deutsch, Eric W. Vizcaíno, Juan Antonio Jones, Andrew R. Binz, Pierre-Alain Lam, Henry Klein, Joshua Bittremieux, Wout Perez-Riverol, Yasset Tabb, David L. Walzer, Mathias Ricard-Blum, Sylvie Hermjakob, Henning Neumann, Steffen Mak, Tytus D. Kawano, Shin Mendoza, Luis Van Den Bossche, Tim Gabriels, Ralf Bandeira, Nuno Carver, Jeremy Pullman, Benjamin Sun, Zhi Hoffmann, Nils Shofstahl, Jim Zhu, Yunping Licata, Luana Quaglia, Federica Tosatto, Silvio C. E. Orchard, Sandra E. |
author_sort | Deutsch, Eric W. |
collection | PubMed |
description | [Image: see text] The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry since its inception 20 years ago. Here we describe the general operation of the PSI, including its leadership, working groups, yearly workshops, and the document process by which proposals are thoroughly and publicly reviewed in order to be ratified as PSI standards. We briefly describe the current state of the many existing PSI standards, some of which remain the same as when originally developed, some of which have undergone subsequent revisions, and some of which have become obsolete. Then the set of proposals currently being developed are described, with an open call to the community for participation in the forging of the next generation of standards. Finally, we describe some synergies and collaborations with other organizations and look to the future in how the PSI will continue to promote the open sharing of data and thus accelerate the progress of the field of proteomics. |
format | Online Article Text |
id | pubmed-9903322 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-99033222023-02-08 Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work Deutsch, Eric W. Vizcaíno, Juan Antonio Jones, Andrew R. Binz, Pierre-Alain Lam, Henry Klein, Joshua Bittremieux, Wout Perez-Riverol, Yasset Tabb, David L. Walzer, Mathias Ricard-Blum, Sylvie Hermjakob, Henning Neumann, Steffen Mak, Tytus D. Kawano, Shin Mendoza, Luis Van Den Bossche, Tim Gabriels, Ralf Bandeira, Nuno Carver, Jeremy Pullman, Benjamin Sun, Zhi Hoffmann, Nils Shofstahl, Jim Zhu, Yunping Licata, Luana Quaglia, Federica Tosatto, Silvio C. E. Orchard, Sandra E. J Proteome Res [Image: see text] The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry since its inception 20 years ago. Here we describe the general operation of the PSI, including its leadership, working groups, yearly workshops, and the document process by which proposals are thoroughly and publicly reviewed in order to be ratified as PSI standards. We briefly describe the current state of the many existing PSI standards, some of which remain the same as when originally developed, some of which have undergone subsequent revisions, and some of which have become obsolete. Then the set of proposals currently being developed are described, with an open call to the community for participation in the forging of the next generation of standards. Finally, we describe some synergies and collaborations with other organizations and look to the future in how the PSI will continue to promote the open sharing of data and thus accelerate the progress of the field of proteomics. American Chemical Society 2023-01-10 /pmc/articles/PMC9903322/ /pubmed/36626722 http://dx.doi.org/10.1021/acs.jproteome.2c00637 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Deutsch, Eric W. Vizcaíno, Juan Antonio Jones, Andrew R. Binz, Pierre-Alain Lam, Henry Klein, Joshua Bittremieux, Wout Perez-Riverol, Yasset Tabb, David L. Walzer, Mathias Ricard-Blum, Sylvie Hermjakob, Henning Neumann, Steffen Mak, Tytus D. Kawano, Shin Mendoza, Luis Van Den Bossche, Tim Gabriels, Ralf Bandeira, Nuno Carver, Jeremy Pullman, Benjamin Sun, Zhi Hoffmann, Nils Shofstahl, Jim Zhu, Yunping Licata, Luana Quaglia, Federica Tosatto, Silvio C. E. Orchard, Sandra E. Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work |
title | Proteomics
Standards Initiative at Twenty Years: Current
Activities and Future Work |
title_full | Proteomics
Standards Initiative at Twenty Years: Current
Activities and Future Work |
title_fullStr | Proteomics
Standards Initiative at Twenty Years: Current
Activities and Future Work |
title_full_unstemmed | Proteomics
Standards Initiative at Twenty Years: Current
Activities and Future Work |
title_short | Proteomics
Standards Initiative at Twenty Years: Current
Activities and Future Work |
title_sort | proteomics
standards initiative at twenty years: current
activities and future work |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903322/ https://www.ncbi.nlm.nih.gov/pubmed/36626722 http://dx.doi.org/10.1021/acs.jproteome.2c00637 |
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