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Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work

[Image: see text] The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry since its inception 20 years ago. H...

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Autores principales: Deutsch, Eric W., Vizcaíno, Juan Antonio, Jones, Andrew R., Binz, Pierre-Alain, Lam, Henry, Klein, Joshua, Bittremieux, Wout, Perez-Riverol, Yasset, Tabb, David L., Walzer, Mathias, Ricard-Blum, Sylvie, Hermjakob, Henning, Neumann, Steffen, Mak, Tytus D., Kawano, Shin, Mendoza, Luis, Van Den Bossche, Tim, Gabriels, Ralf, Bandeira, Nuno, Carver, Jeremy, Pullman, Benjamin, Sun, Zhi, Hoffmann, Nils, Shofstahl, Jim, Zhu, Yunping, Licata, Luana, Quaglia, Federica, Tosatto, Silvio C. E., Orchard, Sandra E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903322/
https://www.ncbi.nlm.nih.gov/pubmed/36626722
http://dx.doi.org/10.1021/acs.jproteome.2c00637
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author Deutsch, Eric W.
Vizcaíno, Juan Antonio
Jones, Andrew R.
Binz, Pierre-Alain
Lam, Henry
Klein, Joshua
Bittremieux, Wout
Perez-Riverol, Yasset
Tabb, David L.
Walzer, Mathias
Ricard-Blum, Sylvie
Hermjakob, Henning
Neumann, Steffen
Mak, Tytus D.
Kawano, Shin
Mendoza, Luis
Van Den Bossche, Tim
Gabriels, Ralf
Bandeira, Nuno
Carver, Jeremy
Pullman, Benjamin
Sun, Zhi
Hoffmann, Nils
Shofstahl, Jim
Zhu, Yunping
Licata, Luana
Quaglia, Federica
Tosatto, Silvio C. E.
Orchard, Sandra E.
author_facet Deutsch, Eric W.
Vizcaíno, Juan Antonio
Jones, Andrew R.
Binz, Pierre-Alain
Lam, Henry
Klein, Joshua
Bittremieux, Wout
Perez-Riverol, Yasset
Tabb, David L.
Walzer, Mathias
Ricard-Blum, Sylvie
Hermjakob, Henning
Neumann, Steffen
Mak, Tytus D.
Kawano, Shin
Mendoza, Luis
Van Den Bossche, Tim
Gabriels, Ralf
Bandeira, Nuno
Carver, Jeremy
Pullman, Benjamin
Sun, Zhi
Hoffmann, Nils
Shofstahl, Jim
Zhu, Yunping
Licata, Luana
Quaglia, Federica
Tosatto, Silvio C. E.
Orchard, Sandra E.
author_sort Deutsch, Eric W.
collection PubMed
description [Image: see text] The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry since its inception 20 years ago. Here we describe the general operation of the PSI, including its leadership, working groups, yearly workshops, and the document process by which proposals are thoroughly and publicly reviewed in order to be ratified as PSI standards. We briefly describe the current state of the many existing PSI standards, some of which remain the same as when originally developed, some of which have undergone subsequent revisions, and some of which have become obsolete. Then the set of proposals currently being developed are described, with an open call to the community for participation in the forging of the next generation of standards. Finally, we describe some synergies and collaborations with other organizations and look to the future in how the PSI will continue to promote the open sharing of data and thus accelerate the progress of the field of proteomics.
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spelling pubmed-99033222023-02-08 Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work Deutsch, Eric W. Vizcaíno, Juan Antonio Jones, Andrew R. Binz, Pierre-Alain Lam, Henry Klein, Joshua Bittremieux, Wout Perez-Riverol, Yasset Tabb, David L. Walzer, Mathias Ricard-Blum, Sylvie Hermjakob, Henning Neumann, Steffen Mak, Tytus D. Kawano, Shin Mendoza, Luis Van Den Bossche, Tim Gabriels, Ralf Bandeira, Nuno Carver, Jeremy Pullman, Benjamin Sun, Zhi Hoffmann, Nils Shofstahl, Jim Zhu, Yunping Licata, Luana Quaglia, Federica Tosatto, Silvio C. E. Orchard, Sandra E. J Proteome Res [Image: see text] The Human Proteome Organization (HUPO) Proteomics Standards Initiative (PSI) has been successfully developing guidelines, data formats, and controlled vocabularies (CVs) for the proteomics community and other fields supported by mass spectrometry since its inception 20 years ago. Here we describe the general operation of the PSI, including its leadership, working groups, yearly workshops, and the document process by which proposals are thoroughly and publicly reviewed in order to be ratified as PSI standards. We briefly describe the current state of the many existing PSI standards, some of which remain the same as when originally developed, some of which have undergone subsequent revisions, and some of which have become obsolete. Then the set of proposals currently being developed are described, with an open call to the community for participation in the forging of the next generation of standards. Finally, we describe some synergies and collaborations with other organizations and look to the future in how the PSI will continue to promote the open sharing of data and thus accelerate the progress of the field of proteomics. American Chemical Society 2023-01-10 /pmc/articles/PMC9903322/ /pubmed/36626722 http://dx.doi.org/10.1021/acs.jproteome.2c00637 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Deutsch, Eric W.
Vizcaíno, Juan Antonio
Jones, Andrew R.
Binz, Pierre-Alain
Lam, Henry
Klein, Joshua
Bittremieux, Wout
Perez-Riverol, Yasset
Tabb, David L.
Walzer, Mathias
Ricard-Blum, Sylvie
Hermjakob, Henning
Neumann, Steffen
Mak, Tytus D.
Kawano, Shin
Mendoza, Luis
Van Den Bossche, Tim
Gabriels, Ralf
Bandeira, Nuno
Carver, Jeremy
Pullman, Benjamin
Sun, Zhi
Hoffmann, Nils
Shofstahl, Jim
Zhu, Yunping
Licata, Luana
Quaglia, Federica
Tosatto, Silvio C. E.
Orchard, Sandra E.
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work
title Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work
title_full Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work
title_fullStr Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work
title_full_unstemmed Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work
title_short Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work
title_sort proteomics standards initiative at twenty years: current activities and future work
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903322/
https://www.ncbi.nlm.nih.gov/pubmed/36626722
http://dx.doi.org/10.1021/acs.jproteome.2c00637
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