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Evaluate prognostic accuracy of SOFA component score for mortality among adults with sepsis by machine learning method
INTRODUCTION: Sepsis has the characteristics of high incidence, high mortality of ICU patients. Early assessment of disease severity and risk stratification of death in patients with sepsis, and further targeted intervention are very important. The purpose of this study was to develop machine learni...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903420/ https://www.ncbi.nlm.nih.gov/pubmed/36747139 http://dx.doi.org/10.1186/s12879-023-08045-x |
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author | Pan, Xiaobin Xie, Jinbao Zhang, Lihui Wang, Xincai Zhang, Shujuan Zhuang, Yingfeng Lin, Xingsheng Shi, Songjing Shi, Songchang Lin, Wei |
author_facet | Pan, Xiaobin Xie, Jinbao Zhang, Lihui Wang, Xincai Zhang, Shujuan Zhuang, Yingfeng Lin, Xingsheng Shi, Songjing Shi, Songchang Lin, Wei |
author_sort | Pan, Xiaobin |
collection | PubMed |
description | INTRODUCTION: Sepsis has the characteristics of high incidence, high mortality of ICU patients. Early assessment of disease severity and risk stratification of death in patients with sepsis, and further targeted intervention are very important. The purpose of this study was to develop machine learning models based on sequential organ failure assessment (SOFA) components to early predict in-hospital mortality in ICU patients with sepsis and evaluate model performance. METHODS: Patients admitted to ICU with sepsis diagnosis were extracted from MIMIC-IV database for retrospective analysis, and were randomly divided into training set and test set in accordance with 2:1. Six variables were included in this study, all of which were from the scores of 6 organ systems in SOFA score. The machine learning model was trained in the training set and evaluated in the validation set. Six machine learning methods including linear regression analysis, least absolute shrinkage and selection operator (LASSO), Logistic regression analysis (LR), Gaussian Naive Bayes (GNB) and support vector machines (SVM) were used to construct the death risk prediction models, and the accuracy, area under the receiver operating characteristic curve (AUROC), Decision Curve Analysis (DCA) and K-fold cross-validation were used to evaluate the prediction performance of developed models. RESULT: A total of 23,889 patients with sepsis were enrolled, of whom 3659 died in hospital. Three feature variables including renal system score, central nervous system score and cardio vascular system score were used to establish prediction models. The accuracy of the LR, GNB, SVM were 0.851, 0.844 and 0.862, respectively, which were better than linear regression analysis (0.123) and LASSO (0.130). The AUROCs of LR, GNB and SVM were 0.76, 0.76 and 0.67, respectively. K-fold cross validation showed that the average AUROCs of LR, GNB and SVM were 0.757 ± 0.005, 0.762 ± 0.006, 0.630 ± 0.013, respectively. For the probability threshold of 5–50%, LY and GNB models both showed positive net benefits. CONCLUSION: The two machine learning-based models (LR and GNB models) based on SOFA components can be used to predict in-hospital mortality of septic patients admitted to ICU. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12879-023-08045-x. |
format | Online Article Text |
id | pubmed-9903420 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-99034202023-02-08 Evaluate prognostic accuracy of SOFA component score for mortality among adults with sepsis by machine learning method Pan, Xiaobin Xie, Jinbao Zhang, Lihui Wang, Xincai Zhang, Shujuan Zhuang, Yingfeng Lin, Xingsheng Shi, Songjing Shi, Songchang Lin, Wei BMC Infect Dis Research INTRODUCTION: Sepsis has the characteristics of high incidence, high mortality of ICU patients. Early assessment of disease severity and risk stratification of death in patients with sepsis, and further targeted intervention are very important. The purpose of this study was to develop machine learning models based on sequential organ failure assessment (SOFA) components to early predict in-hospital mortality in ICU patients with sepsis and evaluate model performance. METHODS: Patients admitted to ICU with sepsis diagnosis were extracted from MIMIC-IV database for retrospective analysis, and were randomly divided into training set and test set in accordance with 2:1. Six variables were included in this study, all of which were from the scores of 6 organ systems in SOFA score. The machine learning model was trained in the training set and evaluated in the validation set. Six machine learning methods including linear regression analysis, least absolute shrinkage and selection operator (LASSO), Logistic regression analysis (LR), Gaussian Naive Bayes (GNB) and support vector machines (SVM) were used to construct the death risk prediction models, and the accuracy, area under the receiver operating characteristic curve (AUROC), Decision Curve Analysis (DCA) and K-fold cross-validation were used to evaluate the prediction performance of developed models. RESULT: A total of 23,889 patients with sepsis were enrolled, of whom 3659 died in hospital. Three feature variables including renal system score, central nervous system score and cardio vascular system score were used to establish prediction models. The accuracy of the LR, GNB, SVM were 0.851, 0.844 and 0.862, respectively, which were better than linear regression analysis (0.123) and LASSO (0.130). The AUROCs of LR, GNB and SVM were 0.76, 0.76 and 0.67, respectively. K-fold cross validation showed that the average AUROCs of LR, GNB and SVM were 0.757 ± 0.005, 0.762 ± 0.006, 0.630 ± 0.013, respectively. For the probability threshold of 5–50%, LY and GNB models both showed positive net benefits. CONCLUSION: The two machine learning-based models (LR and GNB models) based on SOFA components can be used to predict in-hospital mortality of septic patients admitted to ICU. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12879-023-08045-x. BioMed Central 2023-02-06 /pmc/articles/PMC9903420/ /pubmed/36747139 http://dx.doi.org/10.1186/s12879-023-08045-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Pan, Xiaobin Xie, Jinbao Zhang, Lihui Wang, Xincai Zhang, Shujuan Zhuang, Yingfeng Lin, Xingsheng Shi, Songjing Shi, Songchang Lin, Wei Evaluate prognostic accuracy of SOFA component score for mortality among adults with sepsis by machine learning method |
title | Evaluate prognostic accuracy of SOFA component score for mortality among adults with sepsis by machine learning method |
title_full | Evaluate prognostic accuracy of SOFA component score for mortality among adults with sepsis by machine learning method |
title_fullStr | Evaluate prognostic accuracy of SOFA component score for mortality among adults with sepsis by machine learning method |
title_full_unstemmed | Evaluate prognostic accuracy of SOFA component score for mortality among adults with sepsis by machine learning method |
title_short | Evaluate prognostic accuracy of SOFA component score for mortality among adults with sepsis by machine learning method |
title_sort | evaluate prognostic accuracy of sofa component score for mortality among adults with sepsis by machine learning method |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903420/ https://www.ncbi.nlm.nih.gov/pubmed/36747139 http://dx.doi.org/10.1186/s12879-023-08045-x |
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