Cargando…

Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

BACKGROUND: Studying genomic variation in rapidly evolving pathogens potentially enables identification of genes supporting their “core biology”, being present, functional and expressed by all strains or “flexible biology”, varying between strains. Genes supporting flexible biology may be considered...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chen, Hongxin, King, Robert, Smith, Dan, Bayon, Carlos, Ashfield, Tom, Torriani, Stefano, Kanyuka, Kostya, Hammond-Kosack, Kim, Bieri, Stephane, Rudd, Jason
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2023
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903594/ https://www.ncbi.nlm.nih.gov/pubmed/36747219 http://dx.doi.org/10.1186/s12915-023-01520-6

Ejemplares similares

Fungal plant pathogen “mutagenomics” reveals tagged and untagged mutations in Zymoseptoria tritici and identifies SSK2 as key morphogenesis and stress-responsive virulence factor
por: Blyth, Hannah R., et al.
Publicado: (2023)

The vesicular trafficking system component MIN7 is required for minimizing Fusarium graminearum infection
por: Machado Wood, Ana K, et al.
Publicado: (2021)

Exploring the diversity of promoter and 5′UTR sequences in ancestral, historic and modern wheat
por: Hammond‐Kosack, Michael C.U., et al.
Publicado: (2021)

Characterization of an antimicrobial and phytotoxic ribonuclease secreted by the fungal wheat pathogen Zymoseptoria tritici
por: Kettles, Graeme J., et al.
Publicado: (2017)

sRNA Profiling Combined With Gene Function Analysis Reveals a Lack of Evidence for Cross-Kingdom RNAi in the Wheat – Zymoseptoria tritici Pathosystem
por: Kettles, Graeme J., et al.
Publicado: (2019)

DArT markers: diversity analyses, genomes comparison, mapping and integration with SSR markers in Triticum monococcum
por: Jing, Hai-Chun, et al.
Publicado: (2009)

Apoplastic recognition of multiple candidate effectors from the wheat pathogen Zymoseptoria tritici in the nonhost plant Nicotiana benthamiana
por: Kettles, Graeme J., et al.
Publicado: (2016)

Induction of distinct plant cell death programs by secreted proteins from the wheat pathogen Zymoseptoria tritici
por: Welch, Thomas, et al.
Publicado: (2022)

RNAi as an emerging approach to control Fusarium head blight disease and mycotoxin contamination in cereals
por: Machado, Ana Karla, et al.
Publicado: (2017)

Prokaryotic Pangenomes Act as Evolving Ecosystems
por: McInerney, James O
Publicado: (2022)

Cell surface immune receptors: the guardians of the plant’s extracellular spaces
por: Kanyuka, Kostya, et al.
Publicado: (2019)

Dissecting the Molecular Interactions between Wheat and the Fungal Pathogen Zymoseptoria tritici
por: Kettles, Graeme J., et al.
Publicado: (2016)

Virus induced gene silencing (VIGS) for functional analysis of wheat genes involved in Zymoseptoria tritici susceptibility and resistance
por: Lee, Wing-Sham, et al.
Publicado: (2015)

Sequence-based pangenomic core detection
por: Schulz, Tizian, et al.
Publicado: (2022)

Pangenome analysis and virulence profiling of Streptococcus intermedius
por: Sinha, Dhiraj, et al.
Publicado: (2021)

Defining the Predicted Protein Secretome of the Fungal Wheat Leaf Pathogen Mycosphaerella graminicola
por: Morais do Amaral, Alexandre, et al.
Publicado: (2012)

Legionella pneumophila pangenome reveals strain-specific virulence factors
por: D'Auria, Giuseppe, et al.
Publicado: (2010)

A large bioassay identifies Stb resistance genes that provide broad resistance against Septoria tritici blotch disease in the UK
por: Tidd, Henry, et al.
Publicado: (2023)

A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces
por: King, Robert, et al.
Publicado: (2017)

PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets
por: Janowska-Sejda, Elzbieta I., et al.
Publicado: (2019)

Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions
por: Urban, Martin, et al.
Publicado: (2015)

Crop pangenomes
por: Pronozin, A.Yu., et al.
Publicado: (2021)

Linking pangenomes and metagenomes: the Prochlorococcus metapangenome
por: Delmont, Tom O., et al.
Publicado: (2018)

A Large Open Pangenome and a Small Core Genome for Giant Pandoraviruses
por: Aherfi, Sarah, et al.
Publicado: (2018)

The methanogen core and pangenome: conservation and variability across biology’s growth temperature extremes
por: Prondzinsky, Paula, et al.
Publicado: (2022)

Estimating Pangenomes with Roary
por: Sitto, Farrah, et al.
Publicado: (2020)

Unbiased pangenome graphs
por: Garrison, Erik, et al.
Publicado: (2022)

Challenges in prokaryote pangenomics
por: Tonkin-Hill, Gerry, et al.
Publicado: (2023)

Comparison of Highly and Weakly Virulent Dickeya solani Strains, With a View on the Pangenome and Panregulon of This Species
por: Golanowska, Malgorzata, et al.
Publicado: (2018)

Pangenomic analysis reveals plant NAD(+) manipulation as an important virulence activity of bacterial pathogen effectors
por: Hulin, Michelle T., et al.
Publicado: (2023)

A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici
por: Badet, Thomas, et al.
Publicado: (2020)

Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon
por: Vaughn, Justin N., et al.
Publicado: (2022)

Analysis of cytochrome b(5) reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence
por: Derbyshire, Mark C., et al.
Publicado: (2015)

Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets
por: Hassan, Afreenish, et al.
Publicado: (2016)

Adding context to the pneumococcal core genes using bioinformatic analysis of the intergenic pangenome of Streptococcus pneumoniae
por: Nielsen, Flemming Damgaard, et al.
Publicado: (2023)

Puzzling Over the Pneumococcal Pangenome
por: Hiller, N. Luisa, et al.
Publicado: (2018)

Methods and Developments in Graphical Pangenomics
por: Outten, Joseph, et al.
Publicado: (2021)

ODGI: understanding pangenome graphs
por: Guarracino, Andrea, et al.
Publicado: (2022)

Pangenomic Genotyping with the Marker Array
por: Mun, Taher, et al.
Publicado: (2022)

Pangenomic genotyping with the marker array
por: Mun, Taher, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_bgc3b3jk7heuk0kdsbda6kiftv