Cargando…

Genotyping by sequencing for estimating relative abundances of diatom taxa in mock communities

BACKGROUND: Diatoms are present in all waters and are highly sensitive to pollution gradients. Therefore, they are ideal bioindicators for water quality assessment. Current indices used in these applications are based on identifying diatom species and counting their abundances using traditional ligh...

Descripción completa

Detalles Bibliográficos
Autores principales:	Çiftçi, Ozan, Wagemaker, Cornelis A. M., Mertens, Adrienne, van Bodegom, Peter, Pirovano, Walter, Gravendeel, Barbara
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2023
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903628/ https://www.ncbi.nlm.nih.gov/pubmed/36747145 http://dx.doi.org/10.1186/s12862-023-02104-2

Ejemplares similares

Phylotranscriptomics reveals the reticulate evolutionary history of a widespread diatom species complex
por: Çiftçi, Ozan, et al.
Publicado: (2022)

Diatoms from Brazil: the taxa recorded by Christian Gottfried Ehrenberg
por: da Silva, Weliton José, et al.
Publicado: (2012)

Instant mock testing with PowerMock
por: Shah, Deep
Publicado: (2013)

A Method for Subsampling Terrestrial Invertebrate Samples in the Laboratory: Estimating Abundance and Taxa Richness
por: Doğramaci, Mahmut, et al.
Publicado: (2010)

Metabarcoding a diverse arthropod mock community
por: Braukmann, Thomas W. A., et al.
Publicado: (2019)

Predicting the Presence and Abundance of Bacterial Taxa in Environmental Communities through Flow Cytometric Fingerprinting
por: Heyse, Jasmine, et al.
Publicado: (2021)

Controlling taxa abundance improves metatranscriptomics differential analysis
por: Ji, Zhicheng, et al.
Publicado: (2023)

Core and Differentially Abundant Bacterial Taxa in the Rhizosphere of Field Grown Brassica napus Genotypes: Implications for Canola Breeding
por: Taye, Zelalem M., et al.
Publicado: (2020)

Endemic and cosmopolitan fungal taxa exhibit differential abundances in total and active communities of Antarctic soils
por: Cox, Filipa, et al.
Publicado: (2019)

Abundance trade-offs and dominant taxa maintain the stability of the bacterioplankton community underlying Microcystis blooms
por: Chen, Jun, et al.
Publicado: (2023)

Annotated 18S and 28S rDNA reference sequences of taxa in the planktonic diatom family Chaetocerotaceae
por: Gaonkar, Chetan C., et al.
Publicado: (2018)

ATLAS Mock-up
por: Noite, Joao
Publicado: (2020)

Bacterial Epibiotic Communities of Ubiquitous and Abundant Marine Diatoms Are Distinct in Short- and Long-Term Associations
por: Crenn, Klervi, et al.
Publicado: (2018)

Efficacy of metabarcoding for identification of fish eggs evaluated with mock communities
por: Duke, Elena M., et al.
Publicado: (2020)

Porcine fungal mock community analyses: Implications for mycobiome investigations
por: Arfken, Ann M., et al.
Publicado: (2023)

To mock or not: a comprehensive comparison of mock IP and DNA input for ChIP-seq
por: Xu, Jinrui, et al.
Publicado: (2020)

Biogeographic Pattern and Network of Rhizosphere Fungal and Bacterial Communities in Panicum miliaceum Fields: Roles of Abundant and Rare Taxa
por: Tian, Lixin, et al.
Publicado: (2023)

Mocking in Oracle PL/SQL
por: GRZYBEK, Maciej
Publicado: (2015)

Chimney piping mock-up
por: CEA Saclay
Publicado: (2000)

In the LEP mock up tunnel
Publicado: (1983)

Tie-Rods Mock-up
por: CEA/ Saclay
Publicado: (2000)

The Seaford Mock-Marriage Case
por: Bullock, Willoughby
Publicado: (1912)

A comparative assessment of adult mosquito trapping methods to estimate spatial patterns of abundance and community composition in southern Africa
por: Gorsich, Erin E., et al.
Publicado: (2019)

Next generation sequencing data of a defined microbial mock community
por: Singer, Esther, et al.
Publicado: (2016)

Characterization and Demonstration of Mock Communities as Control Reagents for Accurate Human Microbiome Community Measurements
por: Tourlousse, Dieter M., et al.
Publicado: (2022)

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
por: Banerjee, Samiran, et al.
Publicado: (2019)

Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa
por: Zhang, Zhaojing, et al.
Publicado: (2017)

Abundant Taxa and Favorable Pathways in the Microbiome of Soda-Saline Lakes in Inner Mongolia
por: Zhao, Dahe, et al.
Publicado: (2020)

New and Interesting Taxa from the Diatom Genus Gomphonema Ehrenberg in Shallow, Nearshore Sites on the Eastern Coast of Lake Baikal
por: Kulikovskiy, Maxim S., et al.
Publicado: (2023)

Inside the LEP mock up tunnel
por: CERN PhotoLab
Publicado: (1983)

Inside the LEP mock up tunnel
Publicado: (1983)

Hackers mock collider computer security
Publicado: (2008)

Hackers mock collider computer security
Publicado: (2008)

Hackers mock collider computer security
Publicado: (2008)

Hackers mock collider computer security
Publicado: (2008)

Ultra-deep, long-read nanopore sequencing of mock microbial community standards
por: Nicholls, Samuel M, et al.
Publicado: (2019)

Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community
por: Sala, Claudia, et al.
Publicado: (2020)

Taxa-function robustness in microbial communities
por: Eng, Alexander, et al.
Publicado: (2018)

The bacterioplankton community composition and a host genotype dependent occurrence of taxa shape the Daphnia magna gut bacterial community
por: Callens, Martijn, et al.
Publicado: (2020)

Effect of Leaf Type and Pesticide Exposure on Abundance of Bacterial Taxa in Mosquito Larval Habitats
por: Muturi, Ephantus J., et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_git3itksgosbsfsj0v2gj949sp