Cargando…

A practical guideline of genomics-driven drug discovery in the era of global biobank meta-analysis

Genomics-driven drug discovery is indispensable for accelerating the development of novel therapeutic targets. However, the drug discovery framework based on evidence from genome-wide association studies (GWASs) has not been established, especially for cross-population GWAS meta-analysis. Here, we i...

Descripción completa

Detalles Bibliográficos
Autores principales: Namba, Shinichi, Konuma, Takahiro, Wu, Kuan-Han, Zhou, Wei, Okada, Yukinori
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903693/
https://www.ncbi.nlm.nih.gov/pubmed/36778001
http://dx.doi.org/10.1016/j.xgen.2022.100190
_version_ 1784883514011811840
author Namba, Shinichi
Konuma, Takahiro
Wu, Kuan-Han
Zhou, Wei
Okada, Yukinori
author_facet Namba, Shinichi
Konuma, Takahiro
Wu, Kuan-Han
Zhou, Wei
Okada, Yukinori
author_sort Namba, Shinichi
collection PubMed
description Genomics-driven drug discovery is indispensable for accelerating the development of novel therapeutic targets. However, the drug discovery framework based on evidence from genome-wide association studies (GWASs) has not been established, especially for cross-population GWAS meta-analysis. Here, we introduce a practical guideline for genomics-driven drug discovery for cross-population meta-analysis, as lessons from the Global Biobank Meta-analysis Initiative (GBMI). Our drug discovery framework encompassed three methodologies and was applied to the 13 common diseases targeted by GBMI (N(mean) = 1,329,242). Individual methodologies complementarily prioritized drugs and drug targets, which were systematically validated by referring previously known drug-disease relationships. Integration of the three methodologies provided a comprehensive catalog of candidate drugs for repositioning, nominating promising drug candidates targeting the genes involved in the coagulation process for venous thromboembolism and the interleukin-4 and interleukin-13 signaling pathway for gout. Our study highlighted key factors for successful genomics-driven drug discovery using cross-population meta-analyses.
format Online
Article
Text
id pubmed-9903693
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-99036932023-02-10 A practical guideline of genomics-driven drug discovery in the era of global biobank meta-analysis Namba, Shinichi Konuma, Takahiro Wu, Kuan-Han Zhou, Wei Okada, Yukinori Cell Genom Article Genomics-driven drug discovery is indispensable for accelerating the development of novel therapeutic targets. However, the drug discovery framework based on evidence from genome-wide association studies (GWASs) has not been established, especially for cross-population GWAS meta-analysis. Here, we introduce a practical guideline for genomics-driven drug discovery for cross-population meta-analysis, as lessons from the Global Biobank Meta-analysis Initiative (GBMI). Our drug discovery framework encompassed three methodologies and was applied to the 13 common diseases targeted by GBMI (N(mean) = 1,329,242). Individual methodologies complementarily prioritized drugs and drug targets, which were systematically validated by referring previously known drug-disease relationships. Integration of the three methodologies provided a comprehensive catalog of candidate drugs for repositioning, nominating promising drug candidates targeting the genes involved in the coagulation process for venous thromboembolism and the interleukin-4 and interleukin-13 signaling pathway for gout. Our study highlighted key factors for successful genomics-driven drug discovery using cross-population meta-analyses. Elsevier 2022-10-12 /pmc/articles/PMC9903693/ /pubmed/36778001 http://dx.doi.org/10.1016/j.xgen.2022.100190 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Namba, Shinichi
Konuma, Takahiro
Wu, Kuan-Han
Zhou, Wei
Okada, Yukinori
A practical guideline of genomics-driven drug discovery in the era of global biobank meta-analysis
title A practical guideline of genomics-driven drug discovery in the era of global biobank meta-analysis
title_full A practical guideline of genomics-driven drug discovery in the era of global biobank meta-analysis
title_fullStr A practical guideline of genomics-driven drug discovery in the era of global biobank meta-analysis
title_full_unstemmed A practical guideline of genomics-driven drug discovery in the era of global biobank meta-analysis
title_short A practical guideline of genomics-driven drug discovery in the era of global biobank meta-analysis
title_sort practical guideline of genomics-driven drug discovery in the era of global biobank meta-analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903693/
https://www.ncbi.nlm.nih.gov/pubmed/36778001
http://dx.doi.org/10.1016/j.xgen.2022.100190
work_keys_str_mv AT nambashinichi apracticalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT konumatakahiro apracticalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT wukuanhan apracticalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT zhouwei apracticalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT apracticalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT okadayukinori apracticalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT nambashinichi practicalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT konumatakahiro practicalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT wukuanhan practicalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT zhouwei practicalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT practicalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis
AT okadayukinori practicalguidelineofgenomicsdrivendrugdiscoveryintheeraofglobalbiobankmetaanalysis