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Leveraging global multi-ancestry meta-analysis in the study of idiopathic pulmonary fibrosis genetics

The research of rare and devastating orphan diseases, such as idiopathic pulmonary fibrosis (IPF) has been limited by the rarity of the disease itself. The prognosis is poor—the prevalence of IPF is only approximately four times the incidence, limiting the recruitment of patients to trials and studi...

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Autores principales: Partanen, Juulia J., Häppölä, Paavo, Zhou, Wei, Lehisto, Arto A., Ainola, Mari, Sutinen, Eva, Allen, Richard J., Stockwell, Amy D., Leavy, Olivia C., Oldham, Justin M., Guillen-Guio, Beatriz, Cox, Nancy J., Hirbo, Jibril B., Schwartz, David A., Fingerlin, Tasha E., Flores, Carlos, Noth, Imre, Yaspan, Brian L., Jenkins, R. Gisli, Wain, Louise V., Ripatti, Samuli, Pirinen, Matti, Laitinen, Tarja, Kaarteenaho, Riitta, Myllärniemi, Marjukka, Daly, Mark J., Koskela, Jukka T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903787/
https://www.ncbi.nlm.nih.gov/pubmed/36777997
http://dx.doi.org/10.1016/j.xgen.2022.100181
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author Partanen, Juulia J.
Häppölä, Paavo
Zhou, Wei
Lehisto, Arto A.
Ainola, Mari
Sutinen, Eva
Allen, Richard J.
Stockwell, Amy D.
Leavy, Olivia C.
Oldham, Justin M.
Guillen-Guio, Beatriz
Cox, Nancy J.
Hirbo, Jibril B.
Schwartz, David A.
Fingerlin, Tasha E.
Flores, Carlos
Noth, Imre
Yaspan, Brian L.
Jenkins, R. Gisli
Wain, Louise V.
Ripatti, Samuli
Pirinen, Matti
Laitinen, Tarja
Kaarteenaho, Riitta
Myllärniemi, Marjukka
Daly, Mark J.
Koskela, Jukka T.
author_facet Partanen, Juulia J.
Häppölä, Paavo
Zhou, Wei
Lehisto, Arto A.
Ainola, Mari
Sutinen, Eva
Allen, Richard J.
Stockwell, Amy D.
Leavy, Olivia C.
Oldham, Justin M.
Guillen-Guio, Beatriz
Cox, Nancy J.
Hirbo, Jibril B.
Schwartz, David A.
Fingerlin, Tasha E.
Flores, Carlos
Noth, Imre
Yaspan, Brian L.
Jenkins, R. Gisli
Wain, Louise V.
Ripatti, Samuli
Pirinen, Matti
Laitinen, Tarja
Kaarteenaho, Riitta
Myllärniemi, Marjukka
Daly, Mark J.
Koskela, Jukka T.
author_sort Partanen, Juulia J.
collection PubMed
description The research of rare and devastating orphan diseases, such as idiopathic pulmonary fibrosis (IPF) has been limited by the rarity of the disease itself. The prognosis is poor—the prevalence of IPF is only approximately four times the incidence, limiting the recruitment of patients to trials and studies of the underlying biology. Global biobanking efforts can dramatically alter the future of IPF research. We describe a large-scale meta-analysis of IPF, with 8,492 patients and 1,355,819 population controls from 13 biobanks around the globe. Finally, we combine this meta-analysis with the largest available meta-analysis of IPF, reaching 11,160 patients and 1,364,410 population controls. We identify seven novel genome-wide significant loci, only one of which would have been identified if the analysis had been limited to European ancestry individuals. We observe notable pleiotropy across IPF susceptibility and severe COVID-19 infection and note an unexplained sex-heterogeneity effect at the strongest IPF locus MUC5B.
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spelling pubmed-99037872023-02-10 Leveraging global multi-ancestry meta-analysis in the study of idiopathic pulmonary fibrosis genetics Partanen, Juulia J. Häppölä, Paavo Zhou, Wei Lehisto, Arto A. Ainola, Mari Sutinen, Eva Allen, Richard J. Stockwell, Amy D. Leavy, Olivia C. Oldham, Justin M. Guillen-Guio, Beatriz Cox, Nancy J. Hirbo, Jibril B. Schwartz, David A. Fingerlin, Tasha E. Flores, Carlos Noth, Imre Yaspan, Brian L. Jenkins, R. Gisli Wain, Louise V. Ripatti, Samuli Pirinen, Matti Laitinen, Tarja Kaarteenaho, Riitta Myllärniemi, Marjukka Daly, Mark J. Koskela, Jukka T. Cell Genom Article The research of rare and devastating orphan diseases, such as idiopathic pulmonary fibrosis (IPF) has been limited by the rarity of the disease itself. The prognosis is poor—the prevalence of IPF is only approximately four times the incidence, limiting the recruitment of patients to trials and studies of the underlying biology. Global biobanking efforts can dramatically alter the future of IPF research. We describe a large-scale meta-analysis of IPF, with 8,492 patients and 1,355,819 population controls from 13 biobanks around the globe. Finally, we combine this meta-analysis with the largest available meta-analysis of IPF, reaching 11,160 patients and 1,364,410 population controls. We identify seven novel genome-wide significant loci, only one of which would have been identified if the analysis had been limited to European ancestry individuals. We observe notable pleiotropy across IPF susceptibility and severe COVID-19 infection and note an unexplained sex-heterogeneity effect at the strongest IPF locus MUC5B. Elsevier 2022-10-12 /pmc/articles/PMC9903787/ /pubmed/36777997 http://dx.doi.org/10.1016/j.xgen.2022.100181 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Partanen, Juulia J.
Häppölä, Paavo
Zhou, Wei
Lehisto, Arto A.
Ainola, Mari
Sutinen, Eva
Allen, Richard J.
Stockwell, Amy D.
Leavy, Olivia C.
Oldham, Justin M.
Guillen-Guio, Beatriz
Cox, Nancy J.
Hirbo, Jibril B.
Schwartz, David A.
Fingerlin, Tasha E.
Flores, Carlos
Noth, Imre
Yaspan, Brian L.
Jenkins, R. Gisli
Wain, Louise V.
Ripatti, Samuli
Pirinen, Matti
Laitinen, Tarja
Kaarteenaho, Riitta
Myllärniemi, Marjukka
Daly, Mark J.
Koskela, Jukka T.
Leveraging global multi-ancestry meta-analysis in the study of idiopathic pulmonary fibrosis genetics
title Leveraging global multi-ancestry meta-analysis in the study of idiopathic pulmonary fibrosis genetics
title_full Leveraging global multi-ancestry meta-analysis in the study of idiopathic pulmonary fibrosis genetics
title_fullStr Leveraging global multi-ancestry meta-analysis in the study of idiopathic pulmonary fibrosis genetics
title_full_unstemmed Leveraging global multi-ancestry meta-analysis in the study of idiopathic pulmonary fibrosis genetics
title_short Leveraging global multi-ancestry meta-analysis in the study of idiopathic pulmonary fibrosis genetics
title_sort leveraging global multi-ancestry meta-analysis in the study of idiopathic pulmonary fibrosis genetics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9903787/
https://www.ncbi.nlm.nih.gov/pubmed/36777997
http://dx.doi.org/10.1016/j.xgen.2022.100181
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