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Nucleus segmentation and classification using residual SE-UNet and feature concatenation approach incervical cytopathology cell images

Introduction: Pap smear is considered to be the primary examination for the diagnosis of cervical cancer. But the analysis of pap smear slides is a time-consuming task and tedious as it requires manual intervention. The diagnostic efficiency depends on the medical expertise of the pathologist, and h...

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Autores principales: Chowdary, G Jignesh, G, Suganya, M, Premalatha, Yogarajah, Pratheepan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9905035/
https://www.ncbi.nlm.nih.gov/pubmed/36744768
http://dx.doi.org/10.1177/15330338221134833
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author Chowdary, G Jignesh
G, Suganya
M, Premalatha
Yogarajah, Pratheepan
author_facet Chowdary, G Jignesh
G, Suganya
M, Premalatha
Yogarajah, Pratheepan
author_sort Chowdary, G Jignesh
collection PubMed
description Introduction: Pap smear is considered to be the primary examination for the diagnosis of cervical cancer. But the analysis of pap smear slides is a time-consuming task and tedious as it requires manual intervention. The diagnostic efficiency depends on the medical expertise of the pathologist, and human error often hinders the diagnosis. Automated segmentation and classification of cervical nuclei will help diagnose cervical cancer in earlier stages. Materials and Methods: The proposed methodology includes three models: a Residual-Squeeze-and-Excitation-module based segmentation model, a fusion-based feature extraction model, and a Multi-layer Perceptron classification model. In the fusion-based feature extraction model, three sets of deep features are extracted from these segmented nuclei using the pre-trained and fine-tuned VGG19, VGG-F, and CaffeNet models, and two hand-crafted descriptors, Bag-of-Features and Linear-Binary-Patterns, are extracted for each image. For this work, Herlev, SIPaKMeD, and ISBI2014 datasets are used for evaluation. The Herlev datasetis used for evaluating both segmentation and classification models. Whereas the SIPaKMeD and ISBI2014 are used for evaluating the classification model, and the segmentation model respectively. Results: The segmentation network enhanced the precision and ZSI by 2.04%, and 2.00% on the Herlev dataset, and the precision and recall by 0.68%, and 2.59% on the ISBI2014 dataset. The classification approach enhanced the accuracy, recall, and specificity by 0.59%, 0.47%, and 1.15% on the Herlev dataset, and by 0.02%, 0.15%, and 0.22% on the SIPaKMed dataset. Conclusion: The experiments demonstrate that the proposed work achieves promising performance on segmentation and classification in cervical cytopathology cell images..
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spelling pubmed-99050352023-02-08 Nucleus segmentation and classification using residual SE-UNet and feature concatenation approach incervical cytopathology cell images Chowdary, G Jignesh G, Suganya M, Premalatha Yogarajah, Pratheepan Technol Cancer Res Treat Original Article Introduction: Pap smear is considered to be the primary examination for the diagnosis of cervical cancer. But the analysis of pap smear slides is a time-consuming task and tedious as it requires manual intervention. The diagnostic efficiency depends on the medical expertise of the pathologist, and human error often hinders the diagnosis. Automated segmentation and classification of cervical nuclei will help diagnose cervical cancer in earlier stages. Materials and Methods: The proposed methodology includes three models: a Residual-Squeeze-and-Excitation-module based segmentation model, a fusion-based feature extraction model, and a Multi-layer Perceptron classification model. In the fusion-based feature extraction model, three sets of deep features are extracted from these segmented nuclei using the pre-trained and fine-tuned VGG19, VGG-F, and CaffeNet models, and two hand-crafted descriptors, Bag-of-Features and Linear-Binary-Patterns, are extracted for each image. For this work, Herlev, SIPaKMeD, and ISBI2014 datasets are used for evaluation. The Herlev datasetis used for evaluating both segmentation and classification models. Whereas the SIPaKMeD and ISBI2014 are used for evaluating the classification model, and the segmentation model respectively. Results: The segmentation network enhanced the precision and ZSI by 2.04%, and 2.00% on the Herlev dataset, and the precision and recall by 0.68%, and 2.59% on the ISBI2014 dataset. The classification approach enhanced the accuracy, recall, and specificity by 0.59%, 0.47%, and 1.15% on the Herlev dataset, and by 0.02%, 0.15%, and 0.22% on the SIPaKMed dataset. Conclusion: The experiments demonstrate that the proposed work achieves promising performance on segmentation and classification in cervical cytopathology cell images.. SAGE Publications 2023-02-06 /pmc/articles/PMC9905035/ /pubmed/36744768 http://dx.doi.org/10.1177/15330338221134833 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Original Article
Chowdary, G Jignesh
G, Suganya
M, Premalatha
Yogarajah, Pratheepan
Nucleus segmentation and classification using residual SE-UNet and feature concatenation approach incervical cytopathology cell images
title Nucleus segmentation and classification using residual SE-UNet and feature concatenation approach incervical cytopathology cell images
title_full Nucleus segmentation and classification using residual SE-UNet and feature concatenation approach incervical cytopathology cell images
title_fullStr Nucleus segmentation and classification using residual SE-UNet and feature concatenation approach incervical cytopathology cell images
title_full_unstemmed Nucleus segmentation and classification using residual SE-UNet and feature concatenation approach incervical cytopathology cell images
title_short Nucleus segmentation and classification using residual SE-UNet and feature concatenation approach incervical cytopathology cell images
title_sort nucleus segmentation and classification using residual se-unet and feature concatenation approach incervical cytopathology cell images
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9905035/
https://www.ncbi.nlm.nih.gov/pubmed/36744768
http://dx.doi.org/10.1177/15330338221134833
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