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Computational chromatography: A machine learning strategy for demixing individual chemical components in complex mixtures

Surface-enhanced Raman spectroscopy (SERS) holds exceptional promise as a streamlined chemical detection strategy for biological and environmental contaminants compared with current laboratory methods. Priority pollutants such as polycyclic aromatic hydrocarbons (PAHs), detectable in water and soil...

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Autores principales: Bajomo, Mary M., Ju, Yilong, Zhou, Jingyi, Elefterescu, Simina, Farr, Corbin, Zhao, Yiping, Neumann, Oara, Nordlander, Peter, Patel, Ankit, Halas, Naomi J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9907149/
https://www.ncbi.nlm.nih.gov/pubmed/36534806
http://dx.doi.org/10.1073/pnas.2211406119
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author Bajomo, Mary M.
Ju, Yilong
Zhou, Jingyi
Elefterescu, Simina
Farr, Corbin
Zhao, Yiping
Neumann, Oara
Nordlander, Peter
Patel, Ankit
Halas, Naomi J.
author_facet Bajomo, Mary M.
Ju, Yilong
Zhou, Jingyi
Elefterescu, Simina
Farr, Corbin
Zhao, Yiping
Neumann, Oara
Nordlander, Peter
Patel, Ankit
Halas, Naomi J.
author_sort Bajomo, Mary M.
collection PubMed
description Surface-enhanced Raman spectroscopy (SERS) holds exceptional promise as a streamlined chemical detection strategy for biological and environmental contaminants compared with current laboratory methods. Priority pollutants such as polycyclic aromatic hydrocarbons (PAHs), detectable in water and soil worldwide and known to induce multiple adverse health effects upon human exposure, are typically found in multicomponent mixtures. By combining the molecular fingerprinting capabilities of SERS with the signal separation and detection capabilities of machine learning (ML), we examine whether individual PAHs can be identified through an analysis of the SERS spectra of multicomponent PAH mixtures. We have developed an unsupervised ML method we call Characteristic Peak Extraction, a dimensionality reduction algorithm that extracts characteristic SERS peaks based on counts of detected peaks of the mixture. By analyzing the SERS spectra of two-component and four-component PAH mixtures where the concentration ratios of the various components vary, this algorithm is able to extract the spectra of each unknown component in the mixture of unknowns, which is then subsequently identified against a SERS spectral library of PAHs. Combining the molecular fingerprinting capabilities of SERS with the signal separation and detection capabilities of ML, this effort is a step toward the computational demixing of unknown chemical components occurring in complex multicomponent mixtures.
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spelling pubmed-99071492023-06-19 Computational chromatography: A machine learning strategy for demixing individual chemical components in complex mixtures Bajomo, Mary M. Ju, Yilong Zhou, Jingyi Elefterescu, Simina Farr, Corbin Zhao, Yiping Neumann, Oara Nordlander, Peter Patel, Ankit Halas, Naomi J. Proc Natl Acad Sci U S A Physical Sciences Surface-enhanced Raman spectroscopy (SERS) holds exceptional promise as a streamlined chemical detection strategy for biological and environmental contaminants compared with current laboratory methods. Priority pollutants such as polycyclic aromatic hydrocarbons (PAHs), detectable in water and soil worldwide and known to induce multiple adverse health effects upon human exposure, are typically found in multicomponent mixtures. By combining the molecular fingerprinting capabilities of SERS with the signal separation and detection capabilities of machine learning (ML), we examine whether individual PAHs can be identified through an analysis of the SERS spectra of multicomponent PAH mixtures. We have developed an unsupervised ML method we call Characteristic Peak Extraction, a dimensionality reduction algorithm that extracts characteristic SERS peaks based on counts of detected peaks of the mixture. By analyzing the SERS spectra of two-component and four-component PAH mixtures where the concentration ratios of the various components vary, this algorithm is able to extract the spectra of each unknown component in the mixture of unknowns, which is then subsequently identified against a SERS spectral library of PAHs. Combining the molecular fingerprinting capabilities of SERS with the signal separation and detection capabilities of ML, this effort is a step toward the computational demixing of unknown chemical components occurring in complex multicomponent mixtures. National Academy of Sciences 2022-12-19 2022-12-27 /pmc/articles/PMC9907149/ /pubmed/36534806 http://dx.doi.org/10.1073/pnas.2211406119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Physical Sciences
Bajomo, Mary M.
Ju, Yilong
Zhou, Jingyi
Elefterescu, Simina
Farr, Corbin
Zhao, Yiping
Neumann, Oara
Nordlander, Peter
Patel, Ankit
Halas, Naomi J.
Computational chromatography: A machine learning strategy for demixing individual chemical components in complex mixtures
title Computational chromatography: A machine learning strategy for demixing individual chemical components in complex mixtures
title_full Computational chromatography: A machine learning strategy for demixing individual chemical components in complex mixtures
title_fullStr Computational chromatography: A machine learning strategy for demixing individual chemical components in complex mixtures
title_full_unstemmed Computational chromatography: A machine learning strategy for demixing individual chemical components in complex mixtures
title_short Computational chromatography: A machine learning strategy for demixing individual chemical components in complex mixtures
title_sort computational chromatography: a machine learning strategy for demixing individual chemical components in complex mixtures
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9907149/
https://www.ncbi.nlm.nih.gov/pubmed/36534806
http://dx.doi.org/10.1073/pnas.2211406119
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