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Diagnostic models and predictive drugs associated with cuproptosis hub genes in Alzheimer's disease

Alzheimer's disease (AD) is a chronic neurodegenerative disease, and its underlying genes and treatments are unclear. Abnormalities in copper metabolism can prevent the clearance of β-amyloid peptides and promote the progression of AD pathogenesis. Therefore, the present study used a bioinforma...

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Autores principales: Zhang, Erdong, Dai, Fengqiu, Chen, Tingting, Liu, Shanhui, Xiao, Chaolun, Shen, Xiangchun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909238/
https://www.ncbi.nlm.nih.gov/pubmed/36776574
http://dx.doi.org/10.3389/fneur.2022.1064639
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author Zhang, Erdong
Dai, Fengqiu
Chen, Tingting
Liu, Shanhui
Xiao, Chaolun
Shen, Xiangchun
author_facet Zhang, Erdong
Dai, Fengqiu
Chen, Tingting
Liu, Shanhui
Xiao, Chaolun
Shen, Xiangchun
author_sort Zhang, Erdong
collection PubMed
description Alzheimer's disease (AD) is a chronic neurodegenerative disease, and its underlying genes and treatments are unclear. Abnormalities in copper metabolism can prevent the clearance of β-amyloid peptides and promote the progression of AD pathogenesis. Therefore, the present study used a bioinformatics approach to perform an integrated analysis of the hub gene based on cuproptosis that can influence the diagnosis and treatment of AD. The gene expression profiles were obtained from the Gene Expression Omnibus database, including non-demented (ND) and AD samples. A total of 2,977 cuproptosis genes were retrieved from published articles. The seven hub genes associated with cuproptosis and AD were obtained from the differentially expressed genes and WGCNA in brain tissue from GSE33000. The GO analysis demonstrated that these genes were involved in phosphoribosyl pyrophosphate, lipid, and glucose metabolism. By stepwise regression and logistic regression analysis, we screened four of the seven cuproptosis genes to construct a diagnostic model for AD, which was validated by GES15222, GS48350, and GSE5281. In addition, immune cell infiltration of samples was investigated for correlation with these hub genes. We identified six drugs targeting these seven cuproptosis genes in DrugBank. Hence, these cuproptosis gene signatures may be an important prognostic indicator for AD and may offer new insights into treatment options.
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spelling pubmed-99092382023-02-10 Diagnostic models and predictive drugs associated with cuproptosis hub genes in Alzheimer's disease Zhang, Erdong Dai, Fengqiu Chen, Tingting Liu, Shanhui Xiao, Chaolun Shen, Xiangchun Front Neurol Neurology Alzheimer's disease (AD) is a chronic neurodegenerative disease, and its underlying genes and treatments are unclear. Abnormalities in copper metabolism can prevent the clearance of β-amyloid peptides and promote the progression of AD pathogenesis. Therefore, the present study used a bioinformatics approach to perform an integrated analysis of the hub gene based on cuproptosis that can influence the diagnosis and treatment of AD. The gene expression profiles were obtained from the Gene Expression Omnibus database, including non-demented (ND) and AD samples. A total of 2,977 cuproptosis genes were retrieved from published articles. The seven hub genes associated with cuproptosis and AD were obtained from the differentially expressed genes and WGCNA in brain tissue from GSE33000. The GO analysis demonstrated that these genes were involved in phosphoribosyl pyrophosphate, lipid, and glucose metabolism. By stepwise regression and logistic regression analysis, we screened four of the seven cuproptosis genes to construct a diagnostic model for AD, which was validated by GES15222, GS48350, and GSE5281. In addition, immune cell infiltration of samples was investigated for correlation with these hub genes. We identified six drugs targeting these seven cuproptosis genes in DrugBank. Hence, these cuproptosis gene signatures may be an important prognostic indicator for AD and may offer new insights into treatment options. Frontiers Media S.A. 2023-01-26 /pmc/articles/PMC9909238/ /pubmed/36776574 http://dx.doi.org/10.3389/fneur.2022.1064639 Text en Copyright © 2023 Zhang, Dai, Chen, Liu, Xiao and Shen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neurology
Zhang, Erdong
Dai, Fengqiu
Chen, Tingting
Liu, Shanhui
Xiao, Chaolun
Shen, Xiangchun
Diagnostic models and predictive drugs associated with cuproptosis hub genes in Alzheimer's disease
title Diagnostic models and predictive drugs associated with cuproptosis hub genes in Alzheimer's disease
title_full Diagnostic models and predictive drugs associated with cuproptosis hub genes in Alzheimer's disease
title_fullStr Diagnostic models and predictive drugs associated with cuproptosis hub genes in Alzheimer's disease
title_full_unstemmed Diagnostic models and predictive drugs associated with cuproptosis hub genes in Alzheimer's disease
title_short Diagnostic models and predictive drugs associated with cuproptosis hub genes in Alzheimer's disease
title_sort diagnostic models and predictive drugs associated with cuproptosis hub genes in alzheimer's disease
topic Neurology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909238/
https://www.ncbi.nlm.nih.gov/pubmed/36776574
http://dx.doi.org/10.3389/fneur.2022.1064639
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