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Deep learning on lateral flow immunoassay for the analysis of detection data

Lateral flow immunoassay (LFIA) is an important detection method in vitro diagnosis, which has been widely used in medical industry. It is difficult to analyze all peak shapes through classical methods due to the complexity of LFIA. Classical methods are generally some peak-finding methods, which ca...

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Autores principales: Liu, Xinquan, Du, Kang, Lin, Si, Wang, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909280/
https://www.ncbi.nlm.nih.gov/pubmed/36777694
http://dx.doi.org/10.3389/fncom.2023.1091180
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author Liu, Xinquan
Du, Kang
Lin, Si
Wang, Yan
author_facet Liu, Xinquan
Du, Kang
Lin, Si
Wang, Yan
author_sort Liu, Xinquan
collection PubMed
description Lateral flow immunoassay (LFIA) is an important detection method in vitro diagnosis, which has been widely used in medical industry. It is difficult to analyze all peak shapes through classical methods due to the complexity of LFIA. Classical methods are generally some peak-finding methods, which cannot distinguish the difference between normal peak and interference or noise peak, and it is also difficult for them to find the weak peak. Here, a novel method based on deep learning was proposed, which can effectively solve these problems. The method had two steps. The first was to classify the data by a classification model and screen out double-peaks data, and second was to realize segmentation of the integral regions through an improved U-Net segmentation model. After training, the accuracy of the classification model for validation set was 99.59%, and using combined loss function (WBCE + DSC), intersection over union (IoU) value of segmentation model for validation set was 0.9680. This method was used in a hand-held fluorescence immunochromatography analyzer designed independently by our team. A Ferritin standard curve was created, and the T/C value correlated well with standard concentrations in the range of 0–500 ng/ml (R(2) = 0.9986). The coefficients of variation (CVs) were ≤ 1.37%. The recovery rate ranged from 96.37 to 105.07%. Interference or noise peaks are the biggest obstacle in the use of hand-held instruments, and often lead to peak-finding errors. Due to the changeable and flexible use environment of hand-held devices, it is not convenient to provide any technical support. This method greatly reduced the failure rate of peak finding, which can reduce the customer’s need for instrument technical support. This study provided a new direction for the data-processing of point-of-care testing (POCT) instruments based on LFIA.
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spelling pubmed-99092802023-02-10 Deep learning on lateral flow immunoassay for the analysis of detection data Liu, Xinquan Du, Kang Lin, Si Wang, Yan Front Comput Neurosci Neuroscience Lateral flow immunoassay (LFIA) is an important detection method in vitro diagnosis, which has been widely used in medical industry. It is difficult to analyze all peak shapes through classical methods due to the complexity of LFIA. Classical methods are generally some peak-finding methods, which cannot distinguish the difference between normal peak and interference or noise peak, and it is also difficult for them to find the weak peak. Here, a novel method based on deep learning was proposed, which can effectively solve these problems. The method had two steps. The first was to classify the data by a classification model and screen out double-peaks data, and second was to realize segmentation of the integral regions through an improved U-Net segmentation model. After training, the accuracy of the classification model for validation set was 99.59%, and using combined loss function (WBCE + DSC), intersection over union (IoU) value of segmentation model for validation set was 0.9680. This method was used in a hand-held fluorescence immunochromatography analyzer designed independently by our team. A Ferritin standard curve was created, and the T/C value correlated well with standard concentrations in the range of 0–500 ng/ml (R(2) = 0.9986). The coefficients of variation (CVs) were ≤ 1.37%. The recovery rate ranged from 96.37 to 105.07%. Interference or noise peaks are the biggest obstacle in the use of hand-held instruments, and often lead to peak-finding errors. Due to the changeable and flexible use environment of hand-held devices, it is not convenient to provide any technical support. This method greatly reduced the failure rate of peak finding, which can reduce the customer’s need for instrument technical support. This study provided a new direction for the data-processing of point-of-care testing (POCT) instruments based on LFIA. Frontiers Media S.A. 2023-01-26 /pmc/articles/PMC9909280/ /pubmed/36777694 http://dx.doi.org/10.3389/fncom.2023.1091180 Text en Copyright © 2023 Liu, Du, Lin and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Liu, Xinquan
Du, Kang
Lin, Si
Wang, Yan
Deep learning on lateral flow immunoassay for the analysis of detection data
title Deep learning on lateral flow immunoassay for the analysis of detection data
title_full Deep learning on lateral flow immunoassay for the analysis of detection data
title_fullStr Deep learning on lateral flow immunoassay for the analysis of detection data
title_full_unstemmed Deep learning on lateral flow immunoassay for the analysis of detection data
title_short Deep learning on lateral flow immunoassay for the analysis of detection data
title_sort deep learning on lateral flow immunoassay for the analysis of detection data
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909280/
https://www.ncbi.nlm.nih.gov/pubmed/36777694
http://dx.doi.org/10.3389/fncom.2023.1091180
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