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Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance
[Image: see text] Molecular dynamics simulations have been employed to investigate the effect of molecular polydispersity on the aggregation of asphaltene. To make the large combinatorial space of possible asphaltene blends accessible to a systematic study via simulation, an upfront unsupervised mac...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909787/ https://www.ncbi.nlm.nih.gov/pubmed/36777594 http://dx.doi.org/10.1021/acsomega.2c07120 |
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author | Pétuya, Rémi Punase, Abhishek Bosoni, Emanuele de Oliveira Filho, Antonio Pedro Sarria, Juan Purkayastha, Nirupam Wylde, Jonathan J. Mohr, Stephan |
author_facet | Pétuya, Rémi Punase, Abhishek Bosoni, Emanuele de Oliveira Filho, Antonio Pedro Sarria, Juan Purkayastha, Nirupam Wylde, Jonathan J. Mohr, Stephan |
author_sort | Pétuya, Rémi |
collection | PubMed |
description | [Image: see text] Molecular dynamics simulations have been employed to investigate the effect of molecular polydispersity on the aggregation of asphaltene. To make the large combinatorial space of possible asphaltene blends accessible to a systematic study via simulation, an upfront unsupervised machine-learning approach (clustering) was employed to identify a reduced set of model molecules representative of the diversity of asphaltene. For these molecules, single asphaltene model simulations have shown a broad range of aggregation behaviors, driven by their structural features: size of the aromatic core, length of the aliphatic chains, and presence of heteroatoms. Then, the combination of these model molecules in a series of mixtures have highlighted the complex and diverse effects of molecular polydispersity on the aggregation process of asphaltene. Simulations yielded both antagonistic and synergistic effects mediated by the trigger or facilitator action of specific asphaltene model molecules. These findings illustrate the necessity of accounting for molecular polydispersity when studying the asphaltene aggregation process and have permitted establishing a robust protocol for the in silico evaluation of the performance of asphaltene inhibitors, as illustrated for the case of a nonylphenol resin. |
format | Online Article Text |
id | pubmed-9909787 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-99097872023-02-10 Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance Pétuya, Rémi Punase, Abhishek Bosoni, Emanuele de Oliveira Filho, Antonio Pedro Sarria, Juan Purkayastha, Nirupam Wylde, Jonathan J. Mohr, Stephan ACS Omega [Image: see text] Molecular dynamics simulations have been employed to investigate the effect of molecular polydispersity on the aggregation of asphaltene. To make the large combinatorial space of possible asphaltene blends accessible to a systematic study via simulation, an upfront unsupervised machine-learning approach (clustering) was employed to identify a reduced set of model molecules representative of the diversity of asphaltene. For these molecules, single asphaltene model simulations have shown a broad range of aggregation behaviors, driven by their structural features: size of the aromatic core, length of the aliphatic chains, and presence of heteroatoms. Then, the combination of these model molecules in a series of mixtures have highlighted the complex and diverse effects of molecular polydispersity on the aggregation process of asphaltene. Simulations yielded both antagonistic and synergistic effects mediated by the trigger or facilitator action of specific asphaltene model molecules. These findings illustrate the necessity of accounting for molecular polydispersity when studying the asphaltene aggregation process and have permitted establishing a robust protocol for the in silico evaluation of the performance of asphaltene inhibitors, as illustrated for the case of a nonylphenol resin. American Chemical Society 2023-01-27 /pmc/articles/PMC9909787/ /pubmed/36777594 http://dx.doi.org/10.1021/acsomega.2c07120 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Pétuya, Rémi Punase, Abhishek Bosoni, Emanuele de Oliveira Filho, Antonio Pedro Sarria, Juan Purkayastha, Nirupam Wylde, Jonathan J. Mohr, Stephan Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance |
title | Molecular Dynamics
Simulations of Asphaltene Aggregation:
Machine-Learning Identification of Representative Molecules, Molecular
Polydispersity, and Inhibitor Performance |
title_full | Molecular Dynamics
Simulations of Asphaltene Aggregation:
Machine-Learning Identification of Representative Molecules, Molecular
Polydispersity, and Inhibitor Performance |
title_fullStr | Molecular Dynamics
Simulations of Asphaltene Aggregation:
Machine-Learning Identification of Representative Molecules, Molecular
Polydispersity, and Inhibitor Performance |
title_full_unstemmed | Molecular Dynamics
Simulations of Asphaltene Aggregation:
Machine-Learning Identification of Representative Molecules, Molecular
Polydispersity, and Inhibitor Performance |
title_short | Molecular Dynamics
Simulations of Asphaltene Aggregation:
Machine-Learning Identification of Representative Molecules, Molecular
Polydispersity, and Inhibitor Performance |
title_sort | molecular dynamics
simulations of asphaltene aggregation:
machine-learning identification of representative molecules, molecular
polydispersity, and inhibitor performance |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909787/ https://www.ncbi.nlm.nih.gov/pubmed/36777594 http://dx.doi.org/10.1021/acsomega.2c07120 |
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