Cargando…

Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance

[Image: see text] Molecular dynamics simulations have been employed to investigate the effect of molecular polydispersity on the aggregation of asphaltene. To make the large combinatorial space of possible asphaltene blends accessible to a systematic study via simulation, an upfront unsupervised mac...

Descripción completa

Detalles Bibliográficos
Autores principales: Pétuya, Rémi, Punase, Abhishek, Bosoni, Emanuele, de Oliveira Filho, Antonio Pedro, Sarria, Juan, Purkayastha, Nirupam, Wylde, Jonathan J., Mohr, Stephan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909787/
https://www.ncbi.nlm.nih.gov/pubmed/36777594
http://dx.doi.org/10.1021/acsomega.2c07120
_version_ 1784884648410611712
author Pétuya, Rémi
Punase, Abhishek
Bosoni, Emanuele
de Oliveira Filho, Antonio Pedro
Sarria, Juan
Purkayastha, Nirupam
Wylde, Jonathan J.
Mohr, Stephan
author_facet Pétuya, Rémi
Punase, Abhishek
Bosoni, Emanuele
de Oliveira Filho, Antonio Pedro
Sarria, Juan
Purkayastha, Nirupam
Wylde, Jonathan J.
Mohr, Stephan
author_sort Pétuya, Rémi
collection PubMed
description [Image: see text] Molecular dynamics simulations have been employed to investigate the effect of molecular polydispersity on the aggregation of asphaltene. To make the large combinatorial space of possible asphaltene blends accessible to a systematic study via simulation, an upfront unsupervised machine-learning approach (clustering) was employed to identify a reduced set of model molecules representative of the diversity of asphaltene. For these molecules, single asphaltene model simulations have shown a broad range of aggregation behaviors, driven by their structural features: size of the aromatic core, length of the aliphatic chains, and presence of heteroatoms. Then, the combination of these model molecules in a series of mixtures have highlighted the complex and diverse effects of molecular polydispersity on the aggregation process of asphaltene. Simulations yielded both antagonistic and synergistic effects mediated by the trigger or facilitator action of specific asphaltene model molecules. These findings illustrate the necessity of accounting for molecular polydispersity when studying the asphaltene aggregation process and have permitted establishing a robust protocol for the in silico evaluation of the performance of asphaltene inhibitors, as illustrated for the case of a nonylphenol resin.
format Online
Article
Text
id pubmed-9909787
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-99097872023-02-10 Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance Pétuya, Rémi Punase, Abhishek Bosoni, Emanuele de Oliveira Filho, Antonio Pedro Sarria, Juan Purkayastha, Nirupam Wylde, Jonathan J. Mohr, Stephan ACS Omega [Image: see text] Molecular dynamics simulations have been employed to investigate the effect of molecular polydispersity on the aggregation of asphaltene. To make the large combinatorial space of possible asphaltene blends accessible to a systematic study via simulation, an upfront unsupervised machine-learning approach (clustering) was employed to identify a reduced set of model molecules representative of the diversity of asphaltene. For these molecules, single asphaltene model simulations have shown a broad range of aggregation behaviors, driven by their structural features: size of the aromatic core, length of the aliphatic chains, and presence of heteroatoms. Then, the combination of these model molecules in a series of mixtures have highlighted the complex and diverse effects of molecular polydispersity on the aggregation process of asphaltene. Simulations yielded both antagonistic and synergistic effects mediated by the trigger or facilitator action of specific asphaltene model molecules. These findings illustrate the necessity of accounting for molecular polydispersity when studying the asphaltene aggregation process and have permitted establishing a robust protocol for the in silico evaluation of the performance of asphaltene inhibitors, as illustrated for the case of a nonylphenol resin. American Chemical Society 2023-01-27 /pmc/articles/PMC9909787/ /pubmed/36777594 http://dx.doi.org/10.1021/acsomega.2c07120 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Pétuya, Rémi
Punase, Abhishek
Bosoni, Emanuele
de Oliveira Filho, Antonio Pedro
Sarria, Juan
Purkayastha, Nirupam
Wylde, Jonathan J.
Mohr, Stephan
Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance
title Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance
title_full Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance
title_fullStr Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance
title_full_unstemmed Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance
title_short Molecular Dynamics Simulations of Asphaltene Aggregation: Machine-Learning Identification of Representative Molecules, Molecular Polydispersity, and Inhibitor Performance
title_sort molecular dynamics simulations of asphaltene aggregation: machine-learning identification of representative molecules, molecular polydispersity, and inhibitor performance
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909787/
https://www.ncbi.nlm.nih.gov/pubmed/36777594
http://dx.doi.org/10.1021/acsomega.2c07120
work_keys_str_mv AT petuyaremi moleculardynamicssimulationsofasphalteneaggregationmachinelearningidentificationofrepresentativemoleculesmolecularpolydispersityandinhibitorperformance
AT punaseabhishek moleculardynamicssimulationsofasphalteneaggregationmachinelearningidentificationofrepresentativemoleculesmolecularpolydispersityandinhibitorperformance
AT bosoniemanuele moleculardynamicssimulationsofasphalteneaggregationmachinelearningidentificationofrepresentativemoleculesmolecularpolydispersityandinhibitorperformance
AT deoliveirafilhoantoniopedro moleculardynamicssimulationsofasphalteneaggregationmachinelearningidentificationofrepresentativemoleculesmolecularpolydispersityandinhibitorperformance
AT sarriajuan moleculardynamicssimulationsofasphalteneaggregationmachinelearningidentificationofrepresentativemoleculesmolecularpolydispersityandinhibitorperformance
AT purkayasthanirupam moleculardynamicssimulationsofasphalteneaggregationmachinelearningidentificationofrepresentativemoleculesmolecularpolydispersityandinhibitorperformance
AT wyldejonathanj moleculardynamicssimulationsofasphalteneaggregationmachinelearningidentificationofrepresentativemoleculesmolecularpolydispersityandinhibitorperformance
AT mohrstephan moleculardynamicssimulationsofasphalteneaggregationmachinelearningidentificationofrepresentativemoleculesmolecularpolydispersityandinhibitorperformance