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Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis

BACKGROUND: Thoracic acute aortic dissection (TAAD), one of the most fatal cardiovascular diseases, leads to sudden death, however, its mechanism remains unclear. METHODS: Three Gene Expression Omnibus datasets were employed to detect differentially expressed genes (DEGs). A similar function and co-...

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Autores principales: Luo, Jun, Shi, Haoming, Ran, Haoyu, Zhang, Cheng, Wu, Qingchen, Shao, Yue
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909862/
https://www.ncbi.nlm.nih.gov/pubmed/36755239
http://dx.doi.org/10.1186/s12872-023-03110-4
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author Luo, Jun
Shi, Haoming
Ran, Haoyu
Zhang, Cheng
Wu, Qingchen
Shao, Yue
author_facet Luo, Jun
Shi, Haoming
Ran, Haoyu
Zhang, Cheng
Wu, Qingchen
Shao, Yue
author_sort Luo, Jun
collection PubMed
description BACKGROUND: Thoracic acute aortic dissection (TAAD), one of the most fatal cardiovascular diseases, leads to sudden death, however, its mechanism remains unclear. METHODS: Three Gene Expression Omnibus datasets were employed to detect differentially expressed genes (DEGs). A similar function and co-expression network was identified by weighted gene co-expression network analysis. The least absolute shrinkage and selection operator, random forest, and support vector machines-recursive feature elimination were utilized to filter diagnostic TAAD markers, and then screened markers were validated by quantitative real-time PCR and another independent dataset. CIBERSORT was deployed to analyze and evaluate immune cell infiltration in TAAD tissues. RESULTS: Twenty-five DEGs were identified and narrowed down to three after screening. Finally, two genes, SLC11A1 and FGL2, were verified by another dataset and qRT-PCR. Function analysis revealed that SLC11A1 and FGL2 play significant roles in immune-inflammatory responses. CONCLUSION: SLC11A1 and FGL2 are differently expressed in aortic dissection and may be involved in immune-inflammatory responses. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12872-023-03110-4.
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spelling pubmed-99098622023-02-10 Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis Luo, Jun Shi, Haoming Ran, Haoyu Zhang, Cheng Wu, Qingchen Shao, Yue BMC Cardiovasc Disord Research BACKGROUND: Thoracic acute aortic dissection (TAAD), one of the most fatal cardiovascular diseases, leads to sudden death, however, its mechanism remains unclear. METHODS: Three Gene Expression Omnibus datasets were employed to detect differentially expressed genes (DEGs). A similar function and co-expression network was identified by weighted gene co-expression network analysis. The least absolute shrinkage and selection operator, random forest, and support vector machines-recursive feature elimination were utilized to filter diagnostic TAAD markers, and then screened markers were validated by quantitative real-time PCR and another independent dataset. CIBERSORT was deployed to analyze and evaluate immune cell infiltration in TAAD tissues. RESULTS: Twenty-five DEGs were identified and narrowed down to three after screening. Finally, two genes, SLC11A1 and FGL2, were verified by another dataset and qRT-PCR. Function analysis revealed that SLC11A1 and FGL2 play significant roles in immune-inflammatory responses. CONCLUSION: SLC11A1 and FGL2 are differently expressed in aortic dissection and may be involved in immune-inflammatory responses. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12872-023-03110-4. BioMed Central 2023-02-08 /pmc/articles/PMC9909862/ /pubmed/36755239 http://dx.doi.org/10.1186/s12872-023-03110-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/ Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Luo, Jun
Shi, Haoming
Ran, Haoyu
Zhang, Cheng
Wu, Qingchen
Shao, Yue
Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis
title Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis
title_full Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis
title_fullStr Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis
title_full_unstemmed Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis
title_short Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis
title_sort identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909862/
https://www.ncbi.nlm.nih.gov/pubmed/36755239
http://dx.doi.org/10.1186/s12872-023-03110-4
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