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Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis
BACKGROUND: Thoracic acute aortic dissection (TAAD), one of the most fatal cardiovascular diseases, leads to sudden death, however, its mechanism remains unclear. METHODS: Three Gene Expression Omnibus datasets were employed to detect differentially expressed genes (DEGs). A similar function and co-...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909862/ https://www.ncbi.nlm.nih.gov/pubmed/36755239 http://dx.doi.org/10.1186/s12872-023-03110-4 |
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author | Luo, Jun Shi, Haoming Ran, Haoyu Zhang, Cheng Wu, Qingchen Shao, Yue |
author_facet | Luo, Jun Shi, Haoming Ran, Haoyu Zhang, Cheng Wu, Qingchen Shao, Yue |
author_sort | Luo, Jun |
collection | PubMed |
description | BACKGROUND: Thoracic acute aortic dissection (TAAD), one of the most fatal cardiovascular diseases, leads to sudden death, however, its mechanism remains unclear. METHODS: Three Gene Expression Omnibus datasets were employed to detect differentially expressed genes (DEGs). A similar function and co-expression network was identified by weighted gene co-expression network analysis. The least absolute shrinkage and selection operator, random forest, and support vector machines-recursive feature elimination were utilized to filter diagnostic TAAD markers, and then screened markers were validated by quantitative real-time PCR and another independent dataset. CIBERSORT was deployed to analyze and evaluate immune cell infiltration in TAAD tissues. RESULTS: Twenty-five DEGs were identified and narrowed down to three after screening. Finally, two genes, SLC11A1 and FGL2, were verified by another dataset and qRT-PCR. Function analysis revealed that SLC11A1 and FGL2 play significant roles in immune-inflammatory responses. CONCLUSION: SLC11A1 and FGL2 are differently expressed in aortic dissection and may be involved in immune-inflammatory responses. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12872-023-03110-4. |
format | Online Article Text |
id | pubmed-9909862 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-99098622023-02-10 Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis Luo, Jun Shi, Haoming Ran, Haoyu Zhang, Cheng Wu, Qingchen Shao, Yue BMC Cardiovasc Disord Research BACKGROUND: Thoracic acute aortic dissection (TAAD), one of the most fatal cardiovascular diseases, leads to sudden death, however, its mechanism remains unclear. METHODS: Three Gene Expression Omnibus datasets were employed to detect differentially expressed genes (DEGs). A similar function and co-expression network was identified by weighted gene co-expression network analysis. The least absolute shrinkage and selection operator, random forest, and support vector machines-recursive feature elimination were utilized to filter diagnostic TAAD markers, and then screened markers were validated by quantitative real-time PCR and another independent dataset. CIBERSORT was deployed to analyze and evaluate immune cell infiltration in TAAD tissues. RESULTS: Twenty-five DEGs were identified and narrowed down to three after screening. Finally, two genes, SLC11A1 and FGL2, were verified by another dataset and qRT-PCR. Function analysis revealed that SLC11A1 and FGL2 play significant roles in immune-inflammatory responses. CONCLUSION: SLC11A1 and FGL2 are differently expressed in aortic dissection and may be involved in immune-inflammatory responses. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12872-023-03110-4. BioMed Central 2023-02-08 /pmc/articles/PMC9909862/ /pubmed/36755239 http://dx.doi.org/10.1186/s12872-023-03110-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/ Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Luo, Jun Shi, Haoming Ran, Haoyu Zhang, Cheng Wu, Qingchen Shao, Yue Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis |
title | Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis |
title_full | Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis |
title_fullStr | Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis |
title_full_unstemmed | Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis |
title_short | Identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis |
title_sort | identification of key biomarkers and immune infiltration in the thoracic acute aortic dissection by bioinformatics analysis |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9909862/ https://www.ncbi.nlm.nih.gov/pubmed/36755239 http://dx.doi.org/10.1186/s12872-023-03110-4 |
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