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Optimal Tuning of Random Survival Forest Hyperparameter with an Application to Liver Disease

BACKGROUND: Random Forest (RF) is a technique that optimises predictive accuracy by fitting an ensemble of trees to stabilise model estimates. The RF techniques were adapted into survival analysis to model the survival of patients with liver disease in order to identify biomarkers that are highly in...

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Autor principal: Dauda, Kazeem Adesina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Penerbit Universiti Sains Malaysia 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9910370/
https://www.ncbi.nlm.nih.gov/pubmed/36818901
http://dx.doi.org/10.21315/mjms2022.29.6.7
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author Dauda, Kazeem Adesina
author_facet Dauda, Kazeem Adesina
author_sort Dauda, Kazeem Adesina
collection PubMed
description BACKGROUND: Random Forest (RF) is a technique that optimises predictive accuracy by fitting an ensemble of trees to stabilise model estimates. The RF techniques were adapted into survival analysis to model the survival of patients with liver disease in order to identify biomarkers that are highly influential in patient prognostics. METHODS: The methodology of this study begins by applying the classical Cox proportional hazard (Cox-PH) model and three parametric survival models (exponential, Weibull and lognormal) to the published dataset. The study further applied the supervised learning methods of Tuning Random Survival Forest (TRSF) parameters and the conditional inference Forest (Cforest) to optimally predict patient survival probabilities. RESULTS: The efficiency of these models was compared using the Akaike information criteria (AIC) and integrated Brier score (IBS). The results revealed that the Cox-PH model (AIC = 185.7233) outperforms the three classical models. We further analysed these data to observe the functional relationships that exist between the patient survival function and the covariates using TRSF. CONCLUSION: The IBS result of the TRFS demonstrated satisfactory performance over other methods. Ultimately, it was observed from the TRSF results that some of the covariates contributed positively and negatively to patient survival prognostics.
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spelling pubmed-99103702023-02-16 Optimal Tuning of Random Survival Forest Hyperparameter with an Application to Liver Disease Dauda, Kazeem Adesina Malays J Med Sci Original Article BACKGROUND: Random Forest (RF) is a technique that optimises predictive accuracy by fitting an ensemble of trees to stabilise model estimates. The RF techniques were adapted into survival analysis to model the survival of patients with liver disease in order to identify biomarkers that are highly influential in patient prognostics. METHODS: The methodology of this study begins by applying the classical Cox proportional hazard (Cox-PH) model and three parametric survival models (exponential, Weibull and lognormal) to the published dataset. The study further applied the supervised learning methods of Tuning Random Survival Forest (TRSF) parameters and the conditional inference Forest (Cforest) to optimally predict patient survival probabilities. RESULTS: The efficiency of these models was compared using the Akaike information criteria (AIC) and integrated Brier score (IBS). The results revealed that the Cox-PH model (AIC = 185.7233) outperforms the three classical models. We further analysed these data to observe the functional relationships that exist between the patient survival function and the covariates using TRSF. CONCLUSION: The IBS result of the TRFS demonstrated satisfactory performance over other methods. Ultimately, it was observed from the TRSF results that some of the covariates contributed positively and negatively to patient survival prognostics. Penerbit Universiti Sains Malaysia 2022-12 2022-12-22 /pmc/articles/PMC9910370/ /pubmed/36818901 http://dx.doi.org/10.21315/mjms2022.29.6.7 Text en © Penerbit Universiti Sains Malaysia, 2022 https://creativecommons.org/licenses/by/4.0/This work is licensed under the terms of the Creative Commons Attribution (CC BY) (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Original Article
Dauda, Kazeem Adesina
Optimal Tuning of Random Survival Forest Hyperparameter with an Application to Liver Disease
title Optimal Tuning of Random Survival Forest Hyperparameter with an Application to Liver Disease
title_full Optimal Tuning of Random Survival Forest Hyperparameter with an Application to Liver Disease
title_fullStr Optimal Tuning of Random Survival Forest Hyperparameter with an Application to Liver Disease
title_full_unstemmed Optimal Tuning of Random Survival Forest Hyperparameter with an Application to Liver Disease
title_short Optimal Tuning of Random Survival Forest Hyperparameter with an Application to Liver Disease
title_sort optimal tuning of random survival forest hyperparameter with an application to liver disease
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9910370/
https://www.ncbi.nlm.nih.gov/pubmed/36818901
http://dx.doi.org/10.21315/mjms2022.29.6.7
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