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Efficient detection of African Swine Fever Virus using minimal equipment through a LAMP PCR method

African swine fever virus (ASFV) currently represents the biggest threat to the porcine industry worldwide, with high economic impact and severe animal health and welfare concerns. Outbreaks have occurred in Europe and Asia since ASFV was reintroduced into the continent in 2007 and, in 2021, ASFV wa...

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Autores principales: Bohorquez, Jose Alejandro, Lanka, Saraswathi, Rosell, Rosa, Pérez-Simó, Marta, Alberch, Mònica, Rodriguez, Fernando, Ganges, Llilianne, Maddox, Carol W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9911463/
https://www.ncbi.nlm.nih.gov/pubmed/36779186
http://dx.doi.org/10.3389/fcimb.2023.1114772
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author Bohorquez, Jose Alejandro
Lanka, Saraswathi
Rosell, Rosa
Pérez-Simó, Marta
Alberch, Mònica
Rodriguez, Fernando
Ganges, Llilianne
Maddox, Carol W.
author_facet Bohorquez, Jose Alejandro
Lanka, Saraswathi
Rosell, Rosa
Pérez-Simó, Marta
Alberch, Mònica
Rodriguez, Fernando
Ganges, Llilianne
Maddox, Carol W.
author_sort Bohorquez, Jose Alejandro
collection PubMed
description African swine fever virus (ASFV) currently represents the biggest threat to the porcine industry worldwide, with high economic impact and severe animal health and welfare concerns. Outbreaks have occurred in Europe and Asia since ASFV was reintroduced into the continent in 2007 and, in 2021, ASFV was detected in the Caribbean, raising alarm about the reemergence of the virus in the Americas. Given the lack of vaccines against ASFV, control of the virus relies on molecular surveillance, which can be delayed due to the need for sample shipment to specialized laboratories. Isothermal PCR techniques, such as LAMP, have become increasingly attractive as point-of-care diagnostic tools given the minimal material expense, equipment, and training required. The present study aimed to develop a LAMP assay for the detection of ASFV. Four LAMP primer sets were designed, based on a consensus sequence for the ASFV p72 gene, and were tested using a synthetic plasmid containing the cloned ASFV p72 target gene as a positive control. Two primer sets, were selected for further validation, given their very short time for amplification. Both primer sets showed thermal stability, amplifying the ASFV DNA at temperatures between 60-70°C and proved to have an analytical limit of detection as low as one ASFV-plasmid DNA copy/µL, using both fluorometric and colorimetric methods. The selected primers did not yield false positive or cross reactive results with other common swine pathogens, showing high specificity. Testing of DNA-spiked samples showed that LAMP amplification was not affected by the nature of the matrices, including oral fluids, tonsils, blood, or rectal swabs. The primer sets were able to detect the two more prevalent ASFV genotypes in the field. Taken together, the results show that ASFV-LAMP-BG2 and ASFV-LAMP-BG3 would be a useful tool for rapid, highly sensitive on-site diagnostic testing.
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spelling pubmed-99114632023-02-11 Efficient detection of African Swine Fever Virus using minimal equipment through a LAMP PCR method Bohorquez, Jose Alejandro Lanka, Saraswathi Rosell, Rosa Pérez-Simó, Marta Alberch, Mònica Rodriguez, Fernando Ganges, Llilianne Maddox, Carol W. Front Cell Infect Microbiol Cellular and Infection Microbiology African swine fever virus (ASFV) currently represents the biggest threat to the porcine industry worldwide, with high economic impact and severe animal health and welfare concerns. Outbreaks have occurred in Europe and Asia since ASFV was reintroduced into the continent in 2007 and, in 2021, ASFV was detected in the Caribbean, raising alarm about the reemergence of the virus in the Americas. Given the lack of vaccines against ASFV, control of the virus relies on molecular surveillance, which can be delayed due to the need for sample shipment to specialized laboratories. Isothermal PCR techniques, such as LAMP, have become increasingly attractive as point-of-care diagnostic tools given the minimal material expense, equipment, and training required. The present study aimed to develop a LAMP assay for the detection of ASFV. Four LAMP primer sets were designed, based on a consensus sequence for the ASFV p72 gene, and were tested using a synthetic plasmid containing the cloned ASFV p72 target gene as a positive control. Two primer sets, were selected for further validation, given their very short time for amplification. Both primer sets showed thermal stability, amplifying the ASFV DNA at temperatures between 60-70°C and proved to have an analytical limit of detection as low as one ASFV-plasmid DNA copy/µL, using both fluorometric and colorimetric methods. The selected primers did not yield false positive or cross reactive results with other common swine pathogens, showing high specificity. Testing of DNA-spiked samples showed that LAMP amplification was not affected by the nature of the matrices, including oral fluids, tonsils, blood, or rectal swabs. The primer sets were able to detect the two more prevalent ASFV genotypes in the field. Taken together, the results show that ASFV-LAMP-BG2 and ASFV-LAMP-BG3 would be a useful tool for rapid, highly sensitive on-site diagnostic testing. Frontiers Media S.A. 2023-01-27 /pmc/articles/PMC9911463/ /pubmed/36779186 http://dx.doi.org/10.3389/fcimb.2023.1114772 Text en Copyright © 2023 Bohorquez, Lanka, Rosell, Pérez-Simó, Alberch, Rodriguez, Ganges and Maddox https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cellular and Infection Microbiology
Bohorquez, Jose Alejandro
Lanka, Saraswathi
Rosell, Rosa
Pérez-Simó, Marta
Alberch, Mònica
Rodriguez, Fernando
Ganges, Llilianne
Maddox, Carol W.
Efficient detection of African Swine Fever Virus using minimal equipment through a LAMP PCR method
title Efficient detection of African Swine Fever Virus using minimal equipment through a LAMP PCR method
title_full Efficient detection of African Swine Fever Virus using minimal equipment through a LAMP PCR method
title_fullStr Efficient detection of African Swine Fever Virus using minimal equipment through a LAMP PCR method
title_full_unstemmed Efficient detection of African Swine Fever Virus using minimal equipment through a LAMP PCR method
title_short Efficient detection of African Swine Fever Virus using minimal equipment through a LAMP PCR method
title_sort efficient detection of african swine fever virus using minimal equipment through a lamp pcr method
topic Cellular and Infection Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9911463/
https://www.ncbi.nlm.nih.gov/pubmed/36779186
http://dx.doi.org/10.3389/fcimb.2023.1114772
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