Cargando…

Fast Identification Method for Screening Bacteria from Faecal Samples Using Oxford Nanopore Technologies MinION Sequencing

Most bacterial identification methods require extensive culturing, strain purification and DNA extraction protocols. This leads to additional expenses and time lags when isolating specific bacteria from complex microbiological ecosystems. This study aimed to develop a fast and robust method for iden...

Descripción completa

Detalles Bibliográficos
Autores principales:	Borges, Ana Sofia G., Basu, Meghna, Brinks, Erik, Bang, Corinna, Cho, Gyu-Sung, Baines, John F., Franke, Andre, Franz, Charles M. A. P.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Springer US 2023
Materias:	Short Communication
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9911510/ https://www.ncbi.nlm.nih.gov/pubmed/36759384 http://dx.doi.org/10.1007/s00284-023-03201-7

Ejemplares similares

Assessing the performance of the Oxford Nanopore Technologies MinION
por: Laver, T., et al.
Publicado: (2015)

Oxford Nanopore MinION Sequencing and Genome Assembly
por: Lu, Hengyun, et al.
Publicado: (2016)

The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
por: Jain, Miten, et al.
Publicado: (2016)

Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
por: Jain, Miten, et al.
Publicado: (2016)

Oxford Nanopore MinION Direct RNA-Seq for Systems Biology
por: Pyatnitskiy, Mikhail A., et al.
Publicado: (2021)

Complete Genome Sequence of Tetracycline-Resistant Serratia liquefaciens S1, Isolated from Mixed Greens, Obtained Using Illumina MiSeq and Oxford Nanopore MinION Sequencing
por: Stein, Maria, et al.
Publicado: (2020)

Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes
por: Judge, Kim, et al.
Publicado: (2015)

Evaluation of Oxford Nanopore MinION RNA-Seq Performance for Human Primary Cells
por: Massaiu, Ilaria, et al.
Publicado: (2021)

Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing
por: Hargreaves, Adam D., et al.
Publicado: (2015)

Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations
por: Oikonomopoulos, Spyros, et al.
Publicado: (2016)

Evaluation of Oxford Nanopore’s MinION Sequencing Device for Microbial Whole Genome Sequencing Applications
por: Tyler, Andrea D., et al.
Publicado: (2018)

Evaluation of the detection of GBA missense mutations and other variants using the Oxford Nanopore MinION
por: Leija‐Salazar, Melissa, et al.
Publicado: (2019)

Complete sequence verification of plasmid DNA using the Oxford Nanopore Technologies’ MinION device
por: Brown, Scott D., et al.
Publicado: (2023)

MinION nanopore sequencing of an influenza genome
por: Wang, Jing, et al.
Publicado: (2015)

De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing
por: Dutreux, Fabien, et al.
Publicado: (2018)

Updates and Comparative Analysis of the Mitochondrial Genomes of Paracoccidioides spp. Using Oxford Nanopore MinION Sequencing
por: Misas, Elizabeth, et al.
Publicado: (2020)

Portable Rabies Virus Sequencing in Canine Rabies Endemic Countries Using the Oxford Nanopore MinION
por: Gigante, Crystal M., et al.
Publicado: (2020)

Calling and Phasing of Single-Nucleotide and Structural Variants of the LDLR Gene Using Oxford Nanopore MinION
por: Nazarenko, Maria S., et al.
Publicado: (2023)

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
por: George, Sophie, et al.
Publicado: (2017)

Corrigendum: Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches
por: George, Sophie, et al.
Publicado: (2018)

Antimicrobial resistance prediction and phylogenetic analysis of Neisseria gonorrhoeae isolates using the Oxford Nanopore MinION sequencer
por: Golparian, Daniel, et al.
Publicado: (2018)

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
por: Istace, Benjamin, et al.
Publicado: (2017)

Environmental DNA sequencing dataset from Lake Erie algal blooms using Oxford Nanopore MinION
por: Koeppel, Alexander F., et al.
Publicado: (2022)

Improved data analysis for the MinION nanopore sequencer
por: Jain, Miten, et al.
Publicado: (2015)

NanoDJ: a Dockerized Jupyter notebook for interactive Oxford Nanopore MinION sequence manipulation and genome assembly
por: Rodríguez-Pérez, Héctor, et al.
Publicado: (2019)

First Draft Genome of the Trypanosomatid Herpetomonas muscarum ingenoplastis through MinION Oxford Nanopore Technology and Illumina Sequencing
por: d’Avila-Levy, Claudia M., et al.
Publicado: (2020)

Forensic SNP Genotyping using Nanopore MinION Sequencing
por: Cornelis, Senne, et al.
Publicado: (2017)

Oxford Nanopore MinION Sequencing Enables Rapid Whole Genome Assembly of Rickettsia typhi in a Resource-Limited Setting
por: Elliott, Ivo, et al.
Publicado: (2020)

Use of Oxford Nanopore MinION to generate full-length sequences of the Blastocystis small subunit (SSU) rRNA gene
por: Maloney, Jenny G., et al.
Publicado: (2020)

Scaffolding of a bacterial genome using MinION nanopore sequencing
por: Karlsson, E., et al.
Publicado: (2015)

MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach
por: Brown, Bonnie L., et al.
Publicado: (2017)

Genome Sequences of Six SARS-CoV-2 Strains Isolated in Morocco, Obtained Using Oxford Nanopore MinION Technology
por: Laamarti, Meriem, et al.
Publicado: (2020)

The first genome assembly of fungal pathogen Pyrenophora tritici-repentis race 1 isolate using Oxford Nanopore MinION sequencing
por: Moolhuijzen, Paula, et al.
Publicado: (2021)

Rapid Oxford Nanopore Technologies MinION Sequencing Workflow for Campylobacter jejuni Identification in Broilers on Site—A Proof-of-Concept Study
por: Marin, Clara, et al.
Publicado: (2022)

MinIONQC: fast and simple quality control for MinION sequencing data
por: Lanfear, R, et al.
Publicado: (2019)

Genome Sequence of SARS-CoV-2 Isolate Cali-01, from Colombia, Obtained Using Oxford Nanopore MinION Sequencing
por: Lopez-Alvarez, Diana, et al.
Publicado: (2020)

Complete mitochondrial genomes of five subspecies of the Eurasian magpie Pica pica, obtained with Oxford Nanopore MinION, and their interpretation regarding intraspecific taxonomy
por: Kryukov, Alexey P., et al.
Publicado: (2020)

Detecting structural variations with precise breakpoints using low-depth WGS data from a single oxford nanopore MinION flowcell
por: Leung, Henry C. M., et al.
Publicado: (2022)

MinION Nanopore Sequencing Enables Correlation between Resistome Phenotype and Genotype of Coliform Bacteria in Municipal Sewage
por: Xia, Yu, et al.
Publicado: (2017)

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer
por: Kilianski, Andy, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_4i412im4c75evv4ouurqi2brmb