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The history and organization of the Workshop on Population and Speciation Genomics

With the advent of high-throughput genome sequencing, bioinformatics training has become essential for research in evolutionary biology and related fields. However, individual research groups are often not in the position to teach students about the most up-to-date methodology in the field. To fill...

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Autores principales: Barth, Julia M. I., Handley, Scott A., Kintzl, Daniel, Leonard, Guy, Malinsky, Milan, Matschiner, Michael, Meyer, Britta S., Salzburger, Walter, Stefka, Jan, Trucchi, Emiliano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9912212/
https://www.ncbi.nlm.nih.gov/pubmed/36789285
http://dx.doi.org/10.1186/s12052-023-00182-w
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author Barth, Julia M. I.
Handley, Scott A.
Kintzl, Daniel
Leonard, Guy
Malinsky, Milan
Matschiner, Michael
Meyer, Britta S.
Salzburger, Walter
Stefka, Jan
Trucchi, Emiliano
author_facet Barth, Julia M. I.
Handley, Scott A.
Kintzl, Daniel
Leonard, Guy
Malinsky, Milan
Matschiner, Michael
Meyer, Britta S.
Salzburger, Walter
Stefka, Jan
Trucchi, Emiliano
author_sort Barth, Julia M. I.
collection PubMed
description With the advent of high-throughput genome sequencing, bioinformatics training has become essential for research in evolutionary biology and related fields. However, individual research groups are often not in the position to teach students about the most up-to-date methodology in the field. To fill this gap, extended bioinformatics courses have been developed by various institutions and provide intense training over the course of two or more weeks. Here, we describe our experience with the organization of a course in one of the longest-running extended bioinformatics series of workshops, the Evomics Workshop on Population and Speciation Genomics that takes place biennially in the UNESCO world heritage town of Český Krumlov, Czech Republic. We list the key ingredients that make this workshop successful in our view, explain the routine for workshop organization that we have optimized over the years, and describe the most important lessons that we have learned from it. We report the results of a survey conducted among past workshop participants that quantifies measures of effective teaching and provide examples of how the workshop setting has led to the cross-fertilisation of ideas and ultimately scientific progress. We expect that our account may be useful for other groups aiming to set up their own extended bioinformatics courses.
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spelling pubmed-99122122023-02-10 The history and organization of the Workshop on Population and Speciation Genomics Barth, Julia M. I. Handley, Scott A. Kintzl, Daniel Leonard, Guy Malinsky, Milan Matschiner, Michael Meyer, Britta S. Salzburger, Walter Stefka, Jan Trucchi, Emiliano Evolution (N Y) Curriculum and Education With the advent of high-throughput genome sequencing, bioinformatics training has become essential for research in evolutionary biology and related fields. However, individual research groups are often not in the position to teach students about the most up-to-date methodology in the field. To fill this gap, extended bioinformatics courses have been developed by various institutions and provide intense training over the course of two or more weeks. Here, we describe our experience with the organization of a course in one of the longest-running extended bioinformatics series of workshops, the Evomics Workshop on Population and Speciation Genomics that takes place biennially in the UNESCO world heritage town of Český Krumlov, Czech Republic. We list the key ingredients that make this workshop successful in our view, explain the routine for workshop organization that we have optimized over the years, and describe the most important lessons that we have learned from it. We report the results of a survey conducted among past workshop participants that quantifies measures of effective teaching and provide examples of how the workshop setting has led to the cross-fertilisation of ideas and ultimately scientific progress. We expect that our account may be useful for other groups aiming to set up their own extended bioinformatics courses. Springer US 2023-02-10 2023 /pmc/articles/PMC9912212/ /pubmed/36789285 http://dx.doi.org/10.1186/s12052-023-00182-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Curriculum and Education
Barth, Julia M. I.
Handley, Scott A.
Kintzl, Daniel
Leonard, Guy
Malinsky, Milan
Matschiner, Michael
Meyer, Britta S.
Salzburger, Walter
Stefka, Jan
Trucchi, Emiliano
The history and organization of the Workshop on Population and Speciation Genomics
title The history and organization of the Workshop on Population and Speciation Genomics
title_full The history and organization of the Workshop on Population and Speciation Genomics
title_fullStr The history and organization of the Workshop on Population and Speciation Genomics
title_full_unstemmed The history and organization of the Workshop on Population and Speciation Genomics
title_short The history and organization of the Workshop on Population and Speciation Genomics
title_sort history and organization of the workshop on population and speciation genomics
topic Curriculum and Education
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9912212/
https://www.ncbi.nlm.nih.gov/pubmed/36789285
http://dx.doi.org/10.1186/s12052-023-00182-w
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