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Methyl 1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-7-carboxylate: a combined X-ray and DFT study
The title compound, C(16)H(16)N(4)O(3), was obtained as a side product during the synthesis of the previously reported antitubercular agent N-(2-fluoroethyl)-1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-4-carboxamide and structurally characterized by X-ray crystallography...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9912325/ https://www.ncbi.nlm.nih.gov/pubmed/36794056 http://dx.doi.org/10.1107/S2414314623000251 |
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author | Richter, Adrian Goddard, Richard Schönefeld, Roy Imming, Peter Seidel, Rüdiger W. |
author_facet | Richter, Adrian Goddard, Richard Schönefeld, Roy Imming, Peter Seidel, Rüdiger W. |
author_sort | Richter, Adrian |
collection | PubMed |
description | The title compound, C(16)H(16)N(4)O(3), was obtained as a side product during the synthesis of the previously reported antitubercular agent N-(2-fluoroethyl)-1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-4-carboxamide and structurally characterized by X-ray crystallography and computational methods. In the crystal (space group P2(1)/n, Z = 4), the title compound adopts a twisted conformation with a dihedral angle between the benzimidazole and pyrimidine mean planes of 84.11 (3)°. The carboxylate group and the 5-methyl group on the pyrimidine ring exhibit partial disorder. The DFT-optimized molecular structure resembles the structure of the minor component in the crystal. [Image: see text] |
format | Online Article Text |
id | pubmed-9912325 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-99123252023-02-14 Methyl 1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-7-carboxylate: a combined X-ray and DFT study Richter, Adrian Goddard, Richard Schönefeld, Roy Imming, Peter Seidel, Rüdiger W. IUCrdata Data Reports The title compound, C(16)H(16)N(4)O(3), was obtained as a side product during the synthesis of the previously reported antitubercular agent N-(2-fluoroethyl)-1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-4-carboxamide and structurally characterized by X-ray crystallography and computational methods. In the crystal (space group P2(1)/n, Z = 4), the title compound adopts a twisted conformation with a dihedral angle between the benzimidazole and pyrimidine mean planes of 84.11 (3)°. The carboxylate group and the 5-methyl group on the pyrimidine ring exhibit partial disorder. The DFT-optimized molecular structure resembles the structure of the minor component in the crystal. [Image: see text] International Union of Crystallography 2023-01-12 /pmc/articles/PMC9912325/ /pubmed/36794056 http://dx.doi.org/10.1107/S2414314623000251 Text en © Richter et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Data Reports Richter, Adrian Goddard, Richard Schönefeld, Roy Imming, Peter Seidel, Rüdiger W. Methyl 1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-7-carboxylate: a combined X-ray and DFT study |
title | Methyl 1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-7-carboxylate: a combined X-ray and DFT study |
title_full | Methyl 1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-7-carboxylate: a combined X-ray and DFT study |
title_fullStr | Methyl 1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-7-carboxylate: a combined X-ray and DFT study |
title_full_unstemmed | Methyl 1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-7-carboxylate: a combined X-ray and DFT study |
title_short | Methyl 1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1H-benzo[d]imidazole-7-carboxylate: a combined X-ray and DFT study |
title_sort | methyl 1-[(6-methoxy-5-methylpyrimidin-4-yl)methyl]-1h-benzo[d]imidazole-7-carboxylate: a combined x-ray and dft study |
topic | Data Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9912325/ https://www.ncbi.nlm.nih.gov/pubmed/36794056 http://dx.doi.org/10.1107/S2414314623000251 |
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