Cargando…

Coronavirus Immunotherapeutic Consortium Database

The coronavirus disease 2019 (COVID-19) pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has seen multiple anti-SARS-CoV-2 antibodies being generated globally. It is difficult, however, to assemble a useful compendium of these biological properties if they are deri...

Descripción completa

Detalles Bibliográficos
Autores principales: Mahita, Jarjapu, Ha, Brendan, Gambiez, Anais, Schendel, Sharon L, Li, Haoyang, Hastie, Kathryn M, Dennison, S Moses, Li, Kan, Kuzmina, Natalia, Periasamy, Sivakumar, Bukreyev, Alexander, Munt, Jennifer E, Osei-Twum, Mary, Atyeo, Caroline, Overton, James A, Vita, Randi, Guzman-Orozco, Hector, Mendes, Marcus, Kojima, Mari, Halfmann, Peter J, Kawaoka, Yoshihiro, Alter, Galit, Gagnon, Luc, Baric, Ralph S, Tomaras, Georgia D, Germann, Tim, Bedinger, Daniel, Greenbaum, Jason A, Saphire, Erica Ollmann, Peters, Bjoern
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9913043/
https://www.ncbi.nlm.nih.gov/pubmed/36763096
http://dx.doi.org/10.1093/database/baac112
_version_ 1784885332454408192
author Mahita, Jarjapu
Ha, Brendan
Gambiez, Anais
Schendel, Sharon L
Li, Haoyang
Hastie, Kathryn M
Dennison, S Moses
Li, Kan
Kuzmina, Natalia
Periasamy, Sivakumar
Bukreyev, Alexander
Munt, Jennifer E
Osei-Twum, Mary
Atyeo, Caroline
Overton, James A
Vita, Randi
Guzman-Orozco, Hector
Mendes, Marcus
Kojima, Mari
Halfmann, Peter J
Kawaoka, Yoshihiro
Alter, Galit
Gagnon, Luc
Baric, Ralph S
Tomaras, Georgia D
Germann, Tim
Bedinger, Daniel
Greenbaum, Jason A
Saphire, Erica Ollmann
Peters, Bjoern
author_facet Mahita, Jarjapu
Ha, Brendan
Gambiez, Anais
Schendel, Sharon L
Li, Haoyang
Hastie, Kathryn M
Dennison, S Moses
Li, Kan
Kuzmina, Natalia
Periasamy, Sivakumar
Bukreyev, Alexander
Munt, Jennifer E
Osei-Twum, Mary
Atyeo, Caroline
Overton, James A
Vita, Randi
Guzman-Orozco, Hector
Mendes, Marcus
Kojima, Mari
Halfmann, Peter J
Kawaoka, Yoshihiro
Alter, Galit
Gagnon, Luc
Baric, Ralph S
Tomaras, Georgia D
Germann, Tim
Bedinger, Daniel
Greenbaum, Jason A
Saphire, Erica Ollmann
Peters, Bjoern
author_sort Mahita, Jarjapu
collection PubMed
description The coronavirus disease 2019 (COVID-19) pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has seen multiple anti-SARS-CoV-2 antibodies being generated globally. It is difficult, however, to assemble a useful compendium of these biological properties if they are derived from experimental measurements performed at different sites under different experimental conditions. The Coronavirus Immunotherapeutic Consortium (COVIC) circumvents these issues by experimentally testing blinded antibodies side by side for several functional activities. To collect these data in a consistent fashion and make it publicly available, we established the COVIC database (COVIC-DB, https://covicdb.lji.org/). This database enables systematic analysis and interpretation of this large-scale dataset by providing a comprehensive view of various features such as affinity, neutralization, in vivo protection and effector functions for each antibody. Interactive graphs enable direct comparisons of antibodies based on select functional properties. We demonstrate how the COVIC-DB can be utilized to examine relationships among antibody features, thereby guiding the design of therapeutic antibody cocktails. Database URL  https://covicdb.lji.org/
format Online
Article
Text
id pubmed-9913043
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-99130432023-02-13 Coronavirus Immunotherapeutic Consortium Database Mahita, Jarjapu Ha, Brendan Gambiez, Anais Schendel, Sharon L Li, Haoyang Hastie, Kathryn M Dennison, S Moses Li, Kan Kuzmina, Natalia Periasamy, Sivakumar Bukreyev, Alexander Munt, Jennifer E Osei-Twum, Mary Atyeo, Caroline Overton, James A Vita, Randi Guzman-Orozco, Hector Mendes, Marcus Kojima, Mari Halfmann, Peter J Kawaoka, Yoshihiro Alter, Galit Gagnon, Luc Baric, Ralph S Tomaras, Georgia D Germann, Tim Bedinger, Daniel Greenbaum, Jason A Saphire, Erica Ollmann Peters, Bjoern Database (Oxford) Original Article The coronavirus disease 2019 (COVID-19) pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has seen multiple anti-SARS-CoV-2 antibodies being generated globally. It is difficult, however, to assemble a useful compendium of these biological properties if they are derived from experimental measurements performed at different sites under different experimental conditions. The Coronavirus Immunotherapeutic Consortium (COVIC) circumvents these issues by experimentally testing blinded antibodies side by side for several functional activities. To collect these data in a consistent fashion and make it publicly available, we established the COVIC database (COVIC-DB, https://covicdb.lji.org/). This database enables systematic analysis and interpretation of this large-scale dataset by providing a comprehensive view of various features such as affinity, neutralization, in vivo protection and effector functions for each antibody. Interactive graphs enable direct comparisons of antibodies based on select functional properties. We demonstrate how the COVIC-DB can be utilized to examine relationships among antibody features, thereby guiding the design of therapeutic antibody cocktails. Database URL  https://covicdb.lji.org/ Oxford University Press 2023-02-10 /pmc/articles/PMC9913043/ /pubmed/36763096 http://dx.doi.org/10.1093/database/baac112 Text en © The Author(s) 2023. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Mahita, Jarjapu
Ha, Brendan
Gambiez, Anais
Schendel, Sharon L
Li, Haoyang
Hastie, Kathryn M
Dennison, S Moses
Li, Kan
Kuzmina, Natalia
Periasamy, Sivakumar
Bukreyev, Alexander
Munt, Jennifer E
Osei-Twum, Mary
Atyeo, Caroline
Overton, James A
Vita, Randi
Guzman-Orozco, Hector
Mendes, Marcus
Kojima, Mari
Halfmann, Peter J
Kawaoka, Yoshihiro
Alter, Galit
Gagnon, Luc
Baric, Ralph S
Tomaras, Georgia D
Germann, Tim
Bedinger, Daniel
Greenbaum, Jason A
Saphire, Erica Ollmann
Peters, Bjoern
Coronavirus Immunotherapeutic Consortium Database
title Coronavirus Immunotherapeutic Consortium Database
title_full Coronavirus Immunotherapeutic Consortium Database
title_fullStr Coronavirus Immunotherapeutic Consortium Database
title_full_unstemmed Coronavirus Immunotherapeutic Consortium Database
title_short Coronavirus Immunotherapeutic Consortium Database
title_sort coronavirus immunotherapeutic consortium database
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9913043/
https://www.ncbi.nlm.nih.gov/pubmed/36763096
http://dx.doi.org/10.1093/database/baac112
work_keys_str_mv AT mahitajarjapu coronavirusimmunotherapeuticconsortiumdatabase
AT habrendan coronavirusimmunotherapeuticconsortiumdatabase
AT gambiezanais coronavirusimmunotherapeuticconsortiumdatabase
AT schendelsharonl coronavirusimmunotherapeuticconsortiumdatabase
AT lihaoyang coronavirusimmunotherapeuticconsortiumdatabase
AT hastiekathrynm coronavirusimmunotherapeuticconsortiumdatabase
AT dennisonsmoses coronavirusimmunotherapeuticconsortiumdatabase
AT likan coronavirusimmunotherapeuticconsortiumdatabase
AT kuzminanatalia coronavirusimmunotherapeuticconsortiumdatabase
AT periasamysivakumar coronavirusimmunotherapeuticconsortiumdatabase
AT bukreyevalexander coronavirusimmunotherapeuticconsortiumdatabase
AT muntjennifere coronavirusimmunotherapeuticconsortiumdatabase
AT oseitwummary coronavirusimmunotherapeuticconsortiumdatabase
AT atyeocaroline coronavirusimmunotherapeuticconsortiumdatabase
AT overtonjamesa coronavirusimmunotherapeuticconsortiumdatabase
AT vitarandi coronavirusimmunotherapeuticconsortiumdatabase
AT guzmanorozcohector coronavirusimmunotherapeuticconsortiumdatabase
AT mendesmarcus coronavirusimmunotherapeuticconsortiumdatabase
AT kojimamari coronavirusimmunotherapeuticconsortiumdatabase
AT halfmannpeterj coronavirusimmunotherapeuticconsortiumdatabase
AT kawaokayoshihiro coronavirusimmunotherapeuticconsortiumdatabase
AT altergalit coronavirusimmunotherapeuticconsortiumdatabase
AT gagnonluc coronavirusimmunotherapeuticconsortiumdatabase
AT baricralphs coronavirusimmunotherapeuticconsortiumdatabase
AT tomarasgeorgiad coronavirusimmunotherapeuticconsortiumdatabase
AT germanntim coronavirusimmunotherapeuticconsortiumdatabase
AT bedingerdaniel coronavirusimmunotherapeuticconsortiumdatabase
AT greenbaumjasona coronavirusimmunotherapeuticconsortiumdatabase
AT saphireericaollmann coronavirusimmunotherapeuticconsortiumdatabase
AT petersbjoern coronavirusimmunotherapeuticconsortiumdatabase