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Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics
Large-scale high throughput metabolomic technologies are indispensable components of systems biology in terms of discovering and defining the metabolite parts of the system. However, the lack of a plant metabolite spectral library limits the metabolite identification of plant metabolomic studies. He...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9916794/ https://www.ncbi.nlm.nih.gov/pubmed/36768571 http://dx.doi.org/10.3390/ijms24032249 |
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author | Li, Yangyang Zhu, Wei Xiang, Qingyuan Kim, Jeongim Dufresne, Craig Liu, Yufeng Li, Tianlai Chen, Sixue |
author_facet | Li, Yangyang Zhu, Wei Xiang, Qingyuan Kim, Jeongim Dufresne, Craig Liu, Yufeng Li, Tianlai Chen, Sixue |
author_sort | Li, Yangyang |
collection | PubMed |
description | Large-scale high throughput metabolomic technologies are indispensable components of systems biology in terms of discovering and defining the metabolite parts of the system. However, the lack of a plant metabolite spectral library limits the metabolite identification of plant metabolomic studies. Here, we have created a plant metabolite spectral library using 544 authentic standards, which increased the efficiency of identification for untargeted metabolomic studies. The process of creating the spectral library was described, and the mzVault library was deposited in the public repository for free download. Furthermore, based on the spectral library, we describe a process of creating a pseudo-targeted method, which was applied to a proof-of-concept study of Arabidopsis leaf extracts. As authentic standards become available, more metabolite spectra can be easily incorporated into the spectral library to improve the mzVault package. |
format | Online Article Text |
id | pubmed-9916794 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-99167942023-02-11 Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics Li, Yangyang Zhu, Wei Xiang, Qingyuan Kim, Jeongim Dufresne, Craig Liu, Yufeng Li, Tianlai Chen, Sixue Int J Mol Sci Communication Large-scale high throughput metabolomic technologies are indispensable components of systems biology in terms of discovering and defining the metabolite parts of the system. However, the lack of a plant metabolite spectral library limits the metabolite identification of plant metabolomic studies. Here, we have created a plant metabolite spectral library using 544 authentic standards, which increased the efficiency of identification for untargeted metabolomic studies. The process of creating the spectral library was described, and the mzVault library was deposited in the public repository for free download. Furthermore, based on the spectral library, we describe a process of creating a pseudo-targeted method, which was applied to a proof-of-concept study of Arabidopsis leaf extracts. As authentic standards become available, more metabolite spectra can be easily incorporated into the spectral library to improve the mzVault package. MDPI 2023-01-23 /pmc/articles/PMC9916794/ /pubmed/36768571 http://dx.doi.org/10.3390/ijms24032249 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Communication Li, Yangyang Zhu, Wei Xiang, Qingyuan Kim, Jeongim Dufresne, Craig Liu, Yufeng Li, Tianlai Chen, Sixue Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics |
title | Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics |
title_full | Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics |
title_fullStr | Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics |
title_full_unstemmed | Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics |
title_short | Creation of a Plant Metabolite Spectral Library for Untargeted and Targeted Metabolomics |
title_sort | creation of a plant metabolite spectral library for untargeted and targeted metabolomics |
topic | Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9916794/ https://www.ncbi.nlm.nih.gov/pubmed/36768571 http://dx.doi.org/10.3390/ijms24032249 |
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