Cargando…

Comparative Analysis of Library Preparation Approaches for SARS-CoV-2 Genome Sequencing on the Illumina MiSeq Platform

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been responsible for over two years of the COVID-19 pandemic and a global health emergency. Genomic surveillance plays a key role in overcoming the ongoing COVID-19 pandemic despite its relative successive waves and the continuous emer...

Descripción completa

Detalles Bibliográficos
Autores principales:	Gladkikh, Anna, Klyuchnikova, Ekaterina, Pavlova, Polina, Sbarzaglia, Valeriya, Tsyganova, Nadezhda, Popova, Margarita, Arbuzova, Tatiana, Sharova, Alena, Ramsay, Edward, Samoilov, Andrei, Dedkov, Vladimir, Totolian, Areg
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9916928/ https://www.ncbi.nlm.nih.gov/pubmed/36768696 http://dx.doi.org/10.3390/ijms24032374

Ejemplares similares

Epidemiological Features of COVID-19 in Northwest Russia in 2021
por: Gladkikh, Anna, et al.
Publicado: (2022)

Correction: Gladkikh et al. Epidemiological Features of COVID-19 in Northwest Russia in 2021. Viruses 2022, 14, 931
por: Gladkikh, Anna, et al.
Publicado: (2023)

Uninvited Guest: Arrival and Dissemination of Omicron Lineage SARS-CoV-2 in St. Petersburg, Russia
por: Gladkikh, Anna, et al.
Publicado: (2022)

Near complete genome sequences from Southern Vietnam revealed local features of genetic diversity and intergenerational changes in SARS- CoV-2 variants in 2020–2021
por: Gladkikh, Anna S., et al.
Publicado: (2023)

Characterization of a Novel SARS-CoV-2 Genetic Variant with Distinct Spike Protein Mutations
por: Gladkikh, Anna, et al.
Publicado: (2021)

HLA Genotypes in Patients with Infection Caused by Different Strains of SARS-CoV-2
por: Bubnova, Ludmila, et al.
Publicado: (2022)

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform
por: Wen, Chongqing, et al.
Publicado: (2017)

Illumina MiSeq sequencing analysis of fungal diversity in stored dates
por: Al-Bulushi, Ismail M., et al.
Publicado: (2017)

Perspectives of using Illumina MiSeq for identification of arbuscular mycorrhizal fungi
por: Kryukov, A.A., et al.
Publicado: (2020)

COVID-19 Incidence Proportion as a Function of Regional Testing Strategy, Vaccination Coverage, and Vaccine Type
por: Totolian, Areg A., et al.
Publicado: (2023)

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
por: Schirmer, Melanie, et al.
Publicado: (2015)

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
por: Caporaso, J Gregory, et al.
Publicado: (2012)

Quasispecies Analyses of the HIV-1 Near-full-length Genome With Illumina MiSeq
por: Ode, Hirotaka, et al.
Publicado: (2015)

Illumina MiSeq sequencing disfavours a sequence motif in the GFP reporter gene
por: Van den Hoecke, Silvie, et al.
Publicado: (2016)

Qualitative and quantitative assessment of Illumina’s forensic STR and SNP kits on MiSeq FGx™
por: Sharma, Vishakha, et al.
Publicado: (2017)

Whole-Genome Sequencing of Porcine Epidemic Diarrhea Virus by Illumina MiSeq Platform
por: Wang, Leyi, et al.
Publicado: (2015)

Illumina MiSeq Analysis and Comparison of Freshwater Microalgal Communities on Ulleungdo and Dokdo Islands
por: YUN, HYUN-SIK, et al.
Publicado: (2019)

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform
por: Shokralla, Shadi, et al.
Publicado: (2015)

Illumina MiSeq Sequencing for Preliminary Analysis of Microbiome Causing Primary Endodontic Infections in Egypt
por: Tawfik, Sally Ali, et al.
Publicado: (2018)

Assessment of seawater bacterial infection in rabbit tibia by Illumina MiSeq sequencing and bacterial culture
por: Wang, Du, et al.
Publicado: (2021)

Gut microbiome profiling of neonates using Nanopore MinION and Illumina MiSeq sequencing
por: Cha, Teahyen, et al.
Publicado: (2023)

Comparison of Oxford Nanopore Technologies and Illumina MiSeq sequencing with mock communities and agricultural soil
por: Stevens, Bo Maxwell, et al.
Publicado: (2023)

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
por: Nakao, Ryohei, et al.
Publicado: (2021)

Characterization of 13 microsatellite markers for Calochortus gunnisonii (Liliaceae) from Illumina MiSeq sequencing(1)
por: Fuller, Ryan S., et al.
Publicado: (2015)

Characterization of microsatellite markers for pinedrops, Pterospora andromedea (Ericaceae), from Illumina MiSeq sequencing(1)
por: Grubisha, Lisa C., et al.
Publicado: (2014)

Development of microsatellite markers using Illumina MiSeq sequencing to characterize Ephedra gerardiana (Ephedraceae)(1)
por: De, Ji, et al.
Publicado: (2017)

Illumina MiSeq sequencing reveals the effects of grape seed procyanidin on rumen archaeal communities in vitro
por: Zhang, Hua, et al.
Publicado: (2020)

Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq
por: Tshiabuila, Derek, et al.
Publicado: (2022)

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis
por: Wu, Liyou, et al.
Publicado: (2015)

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
por: Fadrosh, Douglas W, et al.
Publicado: (2014)

Assessment of Bifidobacterium Species Using groEL Gene on the Basis of Illumina MiSeq High-Throughput Sequencing
por: Hu, Lujun, et al.
Publicado: (2017)

Illumina-MiSeq analysis of fungi in acid lime roots reveals dominance of Fusarium and variation in fungal taxa
por: Al-Sadi, Abdullah M., et al.
Publicado: (2018)

Effect of Processing Treatment and Modified Atmosphere Packing on Carrot’s Microbial Community Structure by Illumina MiSeq Sequencing
por: Ratajczak, Katarzyna, et al.
Publicado: (2022)

Microbial genome (Illumina MiSeq) sequencing of drinking water treatment residuals to evaluate compatibility with environmental applications
por: Turner, Tomi, et al.
Publicado: (2023)

Characterization of Intestinal Microbiomes of Hirschsprung’s Disease Patients with or without Enterocolitis Using Illumina-MiSeq High-Throughput Sequencing
por: Li, Yuqing, et al.
Publicado: (2016)

A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq
por: Burke, Catherine M., et al.
Publicado: (2016)

In‐depth comparative analysis of Illumina(®) MiSeq run metrics: Development of a wet‐lab quality assessment tool
por: Kastanis, George John, et al.
Publicado: (2019)

Isolation and characterization of 21 polymorphic microsatellite loci for the rockpool shrimp Palaemon elegans using Illumina MiSeq sequencing
por: González-Castellano, Inés, et al.
Publicado: (2018)

Microbial community structure of two freshwater sponges using Illumina MiSeq sequencing revealed high microbial diversity
por: Gaikwad, Swapnil, et al.
Publicado: (2016)

Evaluation of a custom QIAseq targeted DNA panel with 164 ancestry informative markers sequenced with the Illumina MiSeq
por: Truelsen, D., et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_rgfog06373gouj1pmmdgkbha66