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Guiding Drug Repositioning for Cancers Based on Drug Similarity Networks

Drug repositioning aims to discover novel clinical benefits of existing drugs, is an effective way to develop drugs for complex diseases such as cancer and may facilitate the process of traditional drug development. Meanwhile, network-based computational biology approaches, which allow the integrati...

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Autores principales: Qin, Shimei, Li, Wan, Yu, Hongzheng, Xu, Manyi, Li, Chao, Fu, Lei, Sun, Shibin, He, Yuehan, Lv, Junjie, He, Weiming, Chen, Lina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9917231/
https://www.ncbi.nlm.nih.gov/pubmed/36768566
http://dx.doi.org/10.3390/ijms24032244
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author Qin, Shimei
Li, Wan
Yu, Hongzheng
Xu, Manyi
Li, Chao
Fu, Lei
Sun, Shibin
He, Yuehan
Lv, Junjie
He, Weiming
Chen, Lina
author_facet Qin, Shimei
Li, Wan
Yu, Hongzheng
Xu, Manyi
Li, Chao
Fu, Lei
Sun, Shibin
He, Yuehan
Lv, Junjie
He, Weiming
Chen, Lina
author_sort Qin, Shimei
collection PubMed
description Drug repositioning aims to discover novel clinical benefits of existing drugs, is an effective way to develop drugs for complex diseases such as cancer and may facilitate the process of traditional drug development. Meanwhile, network-based computational biology approaches, which allow the integration of information from different aspects to understand the relationships between biomolecules, has been successfully applied to drug repurposing. In this work, we developed a new strategy for network-based drug repositioning against cancer. Combining the mechanism of action and clinical efficacy of the drugs, a cancer-related drug similarity network was constructed, and the correlation score of each drug with a specific cancer was quantified. The top 5% of scoring drugs were reviewed for stability and druggable potential to identify potential repositionable drugs. Of the 11 potentially repurposable drugs for non-small cell lung cancer (NSCLC), 10 were confirmed by clinical trial articles and databases. The targets of these drugs were significantly enriched in cancer-related pathways and significantly associated with the prognosis of NSCLC. In light of the successful application of our approach to colorectal cancer as well, it provides an effective clue and valuable perspective for drug repurposing in cancer.
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spelling pubmed-99172312023-02-11 Guiding Drug Repositioning for Cancers Based on Drug Similarity Networks Qin, Shimei Li, Wan Yu, Hongzheng Xu, Manyi Li, Chao Fu, Lei Sun, Shibin He, Yuehan Lv, Junjie He, Weiming Chen, Lina Int J Mol Sci Article Drug repositioning aims to discover novel clinical benefits of existing drugs, is an effective way to develop drugs for complex diseases such as cancer and may facilitate the process of traditional drug development. Meanwhile, network-based computational biology approaches, which allow the integration of information from different aspects to understand the relationships between biomolecules, has been successfully applied to drug repurposing. In this work, we developed a new strategy for network-based drug repositioning against cancer. Combining the mechanism of action and clinical efficacy of the drugs, a cancer-related drug similarity network was constructed, and the correlation score of each drug with a specific cancer was quantified. The top 5% of scoring drugs were reviewed for stability and druggable potential to identify potential repositionable drugs. Of the 11 potentially repurposable drugs for non-small cell lung cancer (NSCLC), 10 were confirmed by clinical trial articles and databases. The targets of these drugs were significantly enriched in cancer-related pathways and significantly associated with the prognosis of NSCLC. In light of the successful application of our approach to colorectal cancer as well, it provides an effective clue and valuable perspective for drug repurposing in cancer. MDPI 2023-01-23 /pmc/articles/PMC9917231/ /pubmed/36768566 http://dx.doi.org/10.3390/ijms24032244 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Qin, Shimei
Li, Wan
Yu, Hongzheng
Xu, Manyi
Li, Chao
Fu, Lei
Sun, Shibin
He, Yuehan
Lv, Junjie
He, Weiming
Chen, Lina
Guiding Drug Repositioning for Cancers Based on Drug Similarity Networks
title Guiding Drug Repositioning for Cancers Based on Drug Similarity Networks
title_full Guiding Drug Repositioning for Cancers Based on Drug Similarity Networks
title_fullStr Guiding Drug Repositioning for Cancers Based on Drug Similarity Networks
title_full_unstemmed Guiding Drug Repositioning for Cancers Based on Drug Similarity Networks
title_short Guiding Drug Repositioning for Cancers Based on Drug Similarity Networks
title_sort guiding drug repositioning for cancers based on drug similarity networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9917231/
https://www.ncbi.nlm.nih.gov/pubmed/36768566
http://dx.doi.org/10.3390/ijms24032244
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