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Employing Supervised Algorithms for the Prediction of Nanomaterial’s Antioxidant Efficiency

Reactive oxygen species (ROS) are compounds that readily transform into free radicals. Excessive exposure to ROS depletes antioxidant enzymes that protect cells, leading to oxidative stress and cellular damage. Nanomaterials (NMs) exhibit free radical scavenging efficiency representing a potential s...

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Autores principales: Mirzaei, Mahsa, Furxhi, Irini, Murphy, Finbarr, Mullins, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9918003/
https://www.ncbi.nlm.nih.gov/pubmed/36769135
http://dx.doi.org/10.3390/ijms24032792
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author Mirzaei, Mahsa
Furxhi, Irini
Murphy, Finbarr
Mullins, Martin
author_facet Mirzaei, Mahsa
Furxhi, Irini
Murphy, Finbarr
Mullins, Martin
author_sort Mirzaei, Mahsa
collection PubMed
description Reactive oxygen species (ROS) are compounds that readily transform into free radicals. Excessive exposure to ROS depletes antioxidant enzymes that protect cells, leading to oxidative stress and cellular damage. Nanomaterials (NMs) exhibit free radical scavenging efficiency representing a potential solution for oxidative stress-induced disorders. This study aims to demonstrate the application of machine learning (ML) algorithms for predicting the antioxidant efficiency of NMs. We manually compiled a comprehensive dataset based on a literature review of 62 in vitro studies. We extracted NMs’ physico-chemical (P-chem) properties, the NMs’ synthesis technique and various experimental conditions as input features to predict the antioxidant efficiency measured by a 2,2-diphenyl-1-picrylhydrazyl (DPPH) assay. Following data pre-processing, various regression models were trained and validated. The random forest model showed the highest predictive performance reaching an R(2) = 0.83. The attribute importance analysis revealed that the NM’s type, core-size and dosage are the most important attributes influencing the prediction. Our findings corroborate with those of the prior research landscape regarding the importance of P-chem characteristics. This study expands the application of ML in the nano-domain beyond safety-related outcomes by capturing the functional performance. Accordingly, this study has two objectives: (1) to develop a model to forecast the antioxidant efficiency of NMs to complement conventional in vitro assays and (2) to underline the lack of a comprehensive database and the scarcity of relevant data and/or data management practices in the nanotechnology field, especially with regards to functionality assessments.
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spelling pubmed-99180032023-02-11 Employing Supervised Algorithms for the Prediction of Nanomaterial’s Antioxidant Efficiency Mirzaei, Mahsa Furxhi, Irini Murphy, Finbarr Mullins, Martin Int J Mol Sci Article Reactive oxygen species (ROS) are compounds that readily transform into free radicals. Excessive exposure to ROS depletes antioxidant enzymes that protect cells, leading to oxidative stress and cellular damage. Nanomaterials (NMs) exhibit free radical scavenging efficiency representing a potential solution for oxidative stress-induced disorders. This study aims to demonstrate the application of machine learning (ML) algorithms for predicting the antioxidant efficiency of NMs. We manually compiled a comprehensive dataset based on a literature review of 62 in vitro studies. We extracted NMs’ physico-chemical (P-chem) properties, the NMs’ synthesis technique and various experimental conditions as input features to predict the antioxidant efficiency measured by a 2,2-diphenyl-1-picrylhydrazyl (DPPH) assay. Following data pre-processing, various regression models were trained and validated. The random forest model showed the highest predictive performance reaching an R(2) = 0.83. The attribute importance analysis revealed that the NM’s type, core-size and dosage are the most important attributes influencing the prediction. Our findings corroborate with those of the prior research landscape regarding the importance of P-chem characteristics. This study expands the application of ML in the nano-domain beyond safety-related outcomes by capturing the functional performance. Accordingly, this study has two objectives: (1) to develop a model to forecast the antioxidant efficiency of NMs to complement conventional in vitro assays and (2) to underline the lack of a comprehensive database and the scarcity of relevant data and/or data management practices in the nanotechnology field, especially with regards to functionality assessments. MDPI 2023-02-01 /pmc/articles/PMC9918003/ /pubmed/36769135 http://dx.doi.org/10.3390/ijms24032792 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Mirzaei, Mahsa
Furxhi, Irini
Murphy, Finbarr
Mullins, Martin
Employing Supervised Algorithms for the Prediction of Nanomaterial’s Antioxidant Efficiency
title Employing Supervised Algorithms for the Prediction of Nanomaterial’s Antioxidant Efficiency
title_full Employing Supervised Algorithms for the Prediction of Nanomaterial’s Antioxidant Efficiency
title_fullStr Employing Supervised Algorithms for the Prediction of Nanomaterial’s Antioxidant Efficiency
title_full_unstemmed Employing Supervised Algorithms for the Prediction of Nanomaterial’s Antioxidant Efficiency
title_short Employing Supervised Algorithms for the Prediction of Nanomaterial’s Antioxidant Efficiency
title_sort employing supervised algorithms for the prediction of nanomaterial’s antioxidant efficiency
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9918003/
https://www.ncbi.nlm.nih.gov/pubmed/36769135
http://dx.doi.org/10.3390/ijms24032792
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