Cargando…

Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma

Resistance to anoikis is a key characteristic of many cancer cells, promoting cell survival. However, the mechanism of anoikis in hepatocellular carcinoma (HCC) remains unknown. In this study, we applied differentially expressed overlapping anoikis-related genes to classify The Cancer Genome Atlas (...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Yutong, Huang, Weiran, Ouyang, Jian, Wang, Jingxiang, Xie, Zhengwei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9918018/
https://www.ncbi.nlm.nih.gov/pubmed/36769187
http://dx.doi.org/10.3390/ijms24032862
_version_ 1784886509040566272
author Chen, Yutong
Huang, Weiran
Ouyang, Jian
Wang, Jingxiang
Xie, Zhengwei
author_facet Chen, Yutong
Huang, Weiran
Ouyang, Jian
Wang, Jingxiang
Xie, Zhengwei
author_sort Chen, Yutong
collection PubMed
description Resistance to anoikis is a key characteristic of many cancer cells, promoting cell survival. However, the mechanism of anoikis in hepatocellular carcinoma (HCC) remains unknown. In this study, we applied differentially expressed overlapping anoikis-related genes to classify The Cancer Genome Atlas (TCGA) samples using an unsupervised cluster algorithm. Then, we employed weighted gene coexpression network analysis (WGCNA) to identify highly correlated genes and constructed a prognostic risk model based on univariate Cox proportional hazards regression. This model was validated using external datasets from the International Cancer Genome Consortium (ICGC) and Gene Expression Omnibus (GEO). Finally, we used a CIBERSORT algorithm to investigate the correlation between risk score and immune infiltration. Our results showed that the TCGA cohorts could be divided into two subgroups, with subgroup A having a lower survival probability. Five genes (BAK1, SPP1, BSG, PBK and DAP3) were identified as anoikis-related prognostic genes. Moreover, the prognostic risk model effectively predicted overall survival, which was validated using ICGC and GEO datasets. In addition, there was a strong correlation between infiltrating immune cells and prognostic genes and risk score. In conclusion, we identified anoikis-related subgroups and prognostic genes in HCC, which could be significant for understanding the molecular mechanisms and treatment of HCC.
format Online
Article
Text
id pubmed-9918018
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-99180182023-02-11 Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma Chen, Yutong Huang, Weiran Ouyang, Jian Wang, Jingxiang Xie, Zhengwei Int J Mol Sci Article Resistance to anoikis is a key characteristic of many cancer cells, promoting cell survival. However, the mechanism of anoikis in hepatocellular carcinoma (HCC) remains unknown. In this study, we applied differentially expressed overlapping anoikis-related genes to classify The Cancer Genome Atlas (TCGA) samples using an unsupervised cluster algorithm. Then, we employed weighted gene coexpression network analysis (WGCNA) to identify highly correlated genes and constructed a prognostic risk model based on univariate Cox proportional hazards regression. This model was validated using external datasets from the International Cancer Genome Consortium (ICGC) and Gene Expression Omnibus (GEO). Finally, we used a CIBERSORT algorithm to investigate the correlation between risk score and immune infiltration. Our results showed that the TCGA cohorts could be divided into two subgroups, with subgroup A having a lower survival probability. Five genes (BAK1, SPP1, BSG, PBK and DAP3) were identified as anoikis-related prognostic genes. Moreover, the prognostic risk model effectively predicted overall survival, which was validated using ICGC and GEO datasets. In addition, there was a strong correlation between infiltrating immune cells and prognostic genes and risk score. In conclusion, we identified anoikis-related subgroups and prognostic genes in HCC, which could be significant for understanding the molecular mechanisms and treatment of HCC. MDPI 2023-02-02 /pmc/articles/PMC9918018/ /pubmed/36769187 http://dx.doi.org/10.3390/ijms24032862 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chen, Yutong
Huang, Weiran
Ouyang, Jian
Wang, Jingxiang
Xie, Zhengwei
Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma
title Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma
title_full Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma
title_fullStr Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma
title_full_unstemmed Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma
title_short Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma
title_sort identification of anoikis-related subgroups and prognosis model in liver hepatocellular carcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9918018/
https://www.ncbi.nlm.nih.gov/pubmed/36769187
http://dx.doi.org/10.3390/ijms24032862
work_keys_str_mv AT chenyutong identificationofanoikisrelatedsubgroupsandprognosismodelinliverhepatocellularcarcinoma
AT huangweiran identificationofanoikisrelatedsubgroupsandprognosismodelinliverhepatocellularcarcinoma
AT ouyangjian identificationofanoikisrelatedsubgroupsandprognosismodelinliverhepatocellularcarcinoma
AT wangjingxiang identificationofanoikisrelatedsubgroupsandprognosismodelinliverhepatocellularcarcinoma
AT xiezhengwei identificationofanoikisrelatedsubgroupsandprognosismodelinliverhepatocellularcarcinoma