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Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma
Resistance to anoikis is a key characteristic of many cancer cells, promoting cell survival. However, the mechanism of anoikis in hepatocellular carcinoma (HCC) remains unknown. In this study, we applied differentially expressed overlapping anoikis-related genes to classify The Cancer Genome Atlas (...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9918018/ https://www.ncbi.nlm.nih.gov/pubmed/36769187 http://dx.doi.org/10.3390/ijms24032862 |
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author | Chen, Yutong Huang, Weiran Ouyang, Jian Wang, Jingxiang Xie, Zhengwei |
author_facet | Chen, Yutong Huang, Weiran Ouyang, Jian Wang, Jingxiang Xie, Zhengwei |
author_sort | Chen, Yutong |
collection | PubMed |
description | Resistance to anoikis is a key characteristic of many cancer cells, promoting cell survival. However, the mechanism of anoikis in hepatocellular carcinoma (HCC) remains unknown. In this study, we applied differentially expressed overlapping anoikis-related genes to classify The Cancer Genome Atlas (TCGA) samples using an unsupervised cluster algorithm. Then, we employed weighted gene coexpression network analysis (WGCNA) to identify highly correlated genes and constructed a prognostic risk model based on univariate Cox proportional hazards regression. This model was validated using external datasets from the International Cancer Genome Consortium (ICGC) and Gene Expression Omnibus (GEO). Finally, we used a CIBERSORT algorithm to investigate the correlation between risk score and immune infiltration. Our results showed that the TCGA cohorts could be divided into two subgroups, with subgroup A having a lower survival probability. Five genes (BAK1, SPP1, BSG, PBK and DAP3) were identified as anoikis-related prognostic genes. Moreover, the prognostic risk model effectively predicted overall survival, which was validated using ICGC and GEO datasets. In addition, there was a strong correlation between infiltrating immune cells and prognostic genes and risk score. In conclusion, we identified anoikis-related subgroups and prognostic genes in HCC, which could be significant for understanding the molecular mechanisms and treatment of HCC. |
format | Online Article Text |
id | pubmed-9918018 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-99180182023-02-11 Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma Chen, Yutong Huang, Weiran Ouyang, Jian Wang, Jingxiang Xie, Zhengwei Int J Mol Sci Article Resistance to anoikis is a key characteristic of many cancer cells, promoting cell survival. However, the mechanism of anoikis in hepatocellular carcinoma (HCC) remains unknown. In this study, we applied differentially expressed overlapping anoikis-related genes to classify The Cancer Genome Atlas (TCGA) samples using an unsupervised cluster algorithm. Then, we employed weighted gene coexpression network analysis (WGCNA) to identify highly correlated genes and constructed a prognostic risk model based on univariate Cox proportional hazards regression. This model was validated using external datasets from the International Cancer Genome Consortium (ICGC) and Gene Expression Omnibus (GEO). Finally, we used a CIBERSORT algorithm to investigate the correlation between risk score and immune infiltration. Our results showed that the TCGA cohorts could be divided into two subgroups, with subgroup A having a lower survival probability. Five genes (BAK1, SPP1, BSG, PBK and DAP3) were identified as anoikis-related prognostic genes. Moreover, the prognostic risk model effectively predicted overall survival, which was validated using ICGC and GEO datasets. In addition, there was a strong correlation between infiltrating immune cells and prognostic genes and risk score. In conclusion, we identified anoikis-related subgroups and prognostic genes in HCC, which could be significant for understanding the molecular mechanisms and treatment of HCC. MDPI 2023-02-02 /pmc/articles/PMC9918018/ /pubmed/36769187 http://dx.doi.org/10.3390/ijms24032862 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chen, Yutong Huang, Weiran Ouyang, Jian Wang, Jingxiang Xie, Zhengwei Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma |
title | Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma |
title_full | Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma |
title_fullStr | Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma |
title_full_unstemmed | Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma |
title_short | Identification of Anoikis-Related Subgroups and Prognosis Model in Liver Hepatocellular Carcinoma |
title_sort | identification of anoikis-related subgroups and prognosis model in liver hepatocellular carcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9918018/ https://www.ncbi.nlm.nih.gov/pubmed/36769187 http://dx.doi.org/10.3390/ijms24032862 |
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