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Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant

To explore changes in proteins and metabolites under stress circumstances, genomics, proteomics, and metabolomics methods are used. In-depth research over the previous ten years has gradually revealed the fundamental processes of plants’ responses to environmental stress. Abiotic stresses, which inc...

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Autores principales: Naik, Bindu, Kumar, Vijay, Rizwanuddin, Sheikh, Chauhan, Mansi, Choudhary, Megha, Gupta, Arun Kumar, Kumar, Pankaj, Kumar, Vivek, Saris, Per Erik Joakim, Rather, Muzamil Ahmad, Bhuyan, Shuvam, Neog, Panchi Rani, Mishra, Sadhna, Rustagi, Sarvesh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9918255/
https://www.ncbi.nlm.nih.gov/pubmed/36769343
http://dx.doi.org/10.3390/ijms24033025
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author Naik, Bindu
Kumar, Vijay
Rizwanuddin, Sheikh
Chauhan, Mansi
Choudhary, Megha
Gupta, Arun Kumar
Kumar, Pankaj
Kumar, Vivek
Saris, Per Erik Joakim
Rather, Muzamil Ahmad
Bhuyan, Shuvam
Neog, Panchi Rani
Mishra, Sadhna
Rustagi, Sarvesh
author_facet Naik, Bindu
Kumar, Vijay
Rizwanuddin, Sheikh
Chauhan, Mansi
Choudhary, Megha
Gupta, Arun Kumar
Kumar, Pankaj
Kumar, Vivek
Saris, Per Erik Joakim
Rather, Muzamil Ahmad
Bhuyan, Shuvam
Neog, Panchi Rani
Mishra, Sadhna
Rustagi, Sarvesh
author_sort Naik, Bindu
collection PubMed
description To explore changes in proteins and metabolites under stress circumstances, genomics, proteomics, and metabolomics methods are used. In-depth research over the previous ten years has gradually revealed the fundamental processes of plants’ responses to environmental stress. Abiotic stresses, which include temperature extremes, water scarcity, and metal toxicity brought on by human activity and urbanization, are a major cause for concern, since they can result in unsustainable warming trends and drastically lower crop yields. Furthermore, there is an emerging reliance on agrochemicals. Stress is responsible for physiological transformations such as the formation of reactive oxygen, stomatal opening and closure, cytosolic calcium ion concentrations, metabolite profiles and their dynamic changes, expression of stress-responsive genes, activation of potassium channels, etc. Research regarding abiotic stresses is lacking because defense feedbacks to abiotic factors necessitate regulating the changes that activate multiple genes and pathways that are not properly explored. It is clear from the involvement of these genes that plant stress response and adaptation are complicated processes. Targeting the multigenicity of plant abiotic stress responses caused by genomic sequences, transcripts, protein organization and interactions, stress-specific and cellular transcriptome collections, and mutant screens can be the first step in an integrative approach. Therefore, in this review, we focused on the genomes, proteomics, and metabolomics of tomatoes under abiotic stress.
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spelling pubmed-99182552023-02-11 Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant Naik, Bindu Kumar, Vijay Rizwanuddin, Sheikh Chauhan, Mansi Choudhary, Megha Gupta, Arun Kumar Kumar, Pankaj Kumar, Vivek Saris, Per Erik Joakim Rather, Muzamil Ahmad Bhuyan, Shuvam Neog, Panchi Rani Mishra, Sadhna Rustagi, Sarvesh Int J Mol Sci Review To explore changes in proteins and metabolites under stress circumstances, genomics, proteomics, and metabolomics methods are used. In-depth research over the previous ten years has gradually revealed the fundamental processes of plants’ responses to environmental stress. Abiotic stresses, which include temperature extremes, water scarcity, and metal toxicity brought on by human activity and urbanization, are a major cause for concern, since they can result in unsustainable warming trends and drastically lower crop yields. Furthermore, there is an emerging reliance on agrochemicals. Stress is responsible for physiological transformations such as the formation of reactive oxygen, stomatal opening and closure, cytosolic calcium ion concentrations, metabolite profiles and their dynamic changes, expression of stress-responsive genes, activation of potassium channels, etc. Research regarding abiotic stresses is lacking because defense feedbacks to abiotic factors necessitate regulating the changes that activate multiple genes and pathways that are not properly explored. It is clear from the involvement of these genes that plant stress response and adaptation are complicated processes. Targeting the multigenicity of plant abiotic stress responses caused by genomic sequences, transcripts, protein organization and interactions, stress-specific and cellular transcriptome collections, and mutant screens can be the first step in an integrative approach. Therefore, in this review, we focused on the genomes, proteomics, and metabolomics of tomatoes under abiotic stress. MDPI 2023-02-03 /pmc/articles/PMC9918255/ /pubmed/36769343 http://dx.doi.org/10.3390/ijms24033025 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Naik, Bindu
Kumar, Vijay
Rizwanuddin, Sheikh
Chauhan, Mansi
Choudhary, Megha
Gupta, Arun Kumar
Kumar, Pankaj
Kumar, Vivek
Saris, Per Erik Joakim
Rather, Muzamil Ahmad
Bhuyan, Shuvam
Neog, Panchi Rani
Mishra, Sadhna
Rustagi, Sarvesh
Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant
title Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant
title_full Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant
title_fullStr Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant
title_full_unstemmed Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant
title_short Genomics, Proteomics, and Metabolomics Approaches to Improve Abiotic Stress Tolerance in Tomato Plant
title_sort genomics, proteomics, and metabolomics approaches to improve abiotic stress tolerance in tomato plant
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9918255/
https://www.ncbi.nlm.nih.gov/pubmed/36769343
http://dx.doi.org/10.3390/ijms24033025
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