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Parallel Factorization to Implement Group Analysis in Brain Networks Estimation

When dealing with complex functional brain networks, group analysis still represents an open issue. In this paper, we investigated the potential of an innovative approach based on PARAllel FActorization (PARAFAC) for the extraction of the grand average connectivity matrices from both simulated and r...

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Autores principales: Ranieri, Andrea, Pichiorri, Floriana, Colamarino, Emma, de Seta, Valeria, Mattia, Donatella, Toppi, Jlenia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9920099/
https://www.ncbi.nlm.nih.gov/pubmed/36772731
http://dx.doi.org/10.3390/s23031693
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author Ranieri, Andrea
Pichiorri, Floriana
Colamarino, Emma
de Seta, Valeria
Mattia, Donatella
Toppi, Jlenia
author_facet Ranieri, Andrea
Pichiorri, Floriana
Colamarino, Emma
de Seta, Valeria
Mattia, Donatella
Toppi, Jlenia
author_sort Ranieri, Andrea
collection PubMed
description When dealing with complex functional brain networks, group analysis still represents an open issue. In this paper, we investigated the potential of an innovative approach based on PARAllel FActorization (PARAFAC) for the extraction of the grand average connectivity matrices from both simulated and real datasets. The PARAFAC approach was solved using three different numbers of rank-one tensors (PAR-FACT). Synthetic data were parametrized according to different levels of three parameters: network dimension (NODES), number of observations (SAMPLE-SIZE), and noise (SWAP-CON) in order to investigate the way they affect the grand average estimation. PARAFAC was then tested on a real connectivity dataset, derived from EEG data of 17 healthy subjects performing wrist extension with left and right hand separately. Findings on both synthetic and real data revealed the potential of the PARAFAC algorithm as a useful tool for grand average extraction. As expected, the best performances in terms of FPR, FNR, and AUC were achieved for great values of sample size and low noise level. A crucial role has been revealed for the PAR-FACT parameter, revealing that an increase in the number of rank-one tensors solving the PARAFAC problem leads to an increase in FPR values and, thus, to a worse grand average estimation.
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spelling pubmed-99200992023-02-12 Parallel Factorization to Implement Group Analysis in Brain Networks Estimation Ranieri, Andrea Pichiorri, Floriana Colamarino, Emma de Seta, Valeria Mattia, Donatella Toppi, Jlenia Sensors (Basel) Article When dealing with complex functional brain networks, group analysis still represents an open issue. In this paper, we investigated the potential of an innovative approach based on PARAllel FActorization (PARAFAC) for the extraction of the grand average connectivity matrices from both simulated and real datasets. The PARAFAC approach was solved using three different numbers of rank-one tensors (PAR-FACT). Synthetic data were parametrized according to different levels of three parameters: network dimension (NODES), number of observations (SAMPLE-SIZE), and noise (SWAP-CON) in order to investigate the way they affect the grand average estimation. PARAFAC was then tested on a real connectivity dataset, derived from EEG data of 17 healthy subjects performing wrist extension with left and right hand separately. Findings on both synthetic and real data revealed the potential of the PARAFAC algorithm as a useful tool for grand average extraction. As expected, the best performances in terms of FPR, FNR, and AUC were achieved for great values of sample size and low noise level. A crucial role has been revealed for the PAR-FACT parameter, revealing that an increase in the number of rank-one tensors solving the PARAFAC problem leads to an increase in FPR values and, thus, to a worse grand average estimation. MDPI 2023-02-03 /pmc/articles/PMC9920099/ /pubmed/36772731 http://dx.doi.org/10.3390/s23031693 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ranieri, Andrea
Pichiorri, Floriana
Colamarino, Emma
de Seta, Valeria
Mattia, Donatella
Toppi, Jlenia
Parallel Factorization to Implement Group Analysis in Brain Networks Estimation
title Parallel Factorization to Implement Group Analysis in Brain Networks Estimation
title_full Parallel Factorization to Implement Group Analysis in Brain Networks Estimation
title_fullStr Parallel Factorization to Implement Group Analysis in Brain Networks Estimation
title_full_unstemmed Parallel Factorization to Implement Group Analysis in Brain Networks Estimation
title_short Parallel Factorization to Implement Group Analysis in Brain Networks Estimation
title_sort parallel factorization to implement group analysis in brain networks estimation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9920099/
https://www.ncbi.nlm.nih.gov/pubmed/36772731
http://dx.doi.org/10.3390/s23031693
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