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Semisupervised white matter hyperintensities segmentation on MRI
This study proposed a semisupervised loss function named level‐set loss (LSLoss) for cerebral white matter hyperintensities (WMHs) segmentation on fluid‐attenuated inversion recovery images. The training procedure did not require manually labeled WMH masks. Our image preprocessing steps included bia...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9921214/ https://www.ncbi.nlm.nih.gov/pubmed/36214210 http://dx.doi.org/10.1002/hbm.26109 |
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author | Huang, Fan Xia, Peng Vardhanabhuti, Varut Hui, Sai‐Kam Lau, Kui‐Kai Ka‐Fung Mak, Henry Cao, Peng |
author_facet | Huang, Fan Xia, Peng Vardhanabhuti, Varut Hui, Sai‐Kam Lau, Kui‐Kai Ka‐Fung Mak, Henry Cao, Peng |
author_sort | Huang, Fan |
collection | PubMed |
description | This study proposed a semisupervised loss function named level‐set loss (LSLoss) for cerebral white matter hyperintensities (WMHs) segmentation on fluid‐attenuated inversion recovery images. The training procedure did not require manually labeled WMH masks. Our image preprocessing steps included biased field correction, skull stripping, and white matter segmentation. With the proposed LSLoss, we trained a V‐Net using the MRI images from both local and public databases. Local databases were the small vessel disease cohort (HKU‐SVD, n = 360) and the multiple sclerosis cohort (HKU‐MS, n = 20) from our institutional imaging center. Public databases were the Medical Image Computing Computer‐assisted Intervention (MICCAI) WMH challenge database (MICCAI‐WMH, n = 60) and the normal control cohort of the Alzheimer's Disease Neuroimaging Initiative database (ADNI‐CN, n = 15). We achieved an overall dice similarity coefficient (DSC) of 0.81 on the HKU‐SVD testing set (n = 20), DSC = 0.77 on the HKU‐MS testing set (n = 5), and DSC = 0.78 on MICCAI‐WMH testing set (n = 30). The segmentation results obtained by our semisupervised V‐Net were comparable with the supervised methods and outperformed the unsupervised methods in the literature. |
format | Online Article Text |
id | pubmed-9921214 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99212142023-02-13 Semisupervised white matter hyperintensities segmentation on MRI Huang, Fan Xia, Peng Vardhanabhuti, Varut Hui, Sai‐Kam Lau, Kui‐Kai Ka‐Fung Mak, Henry Cao, Peng Hum Brain Mapp Research Articles This study proposed a semisupervised loss function named level‐set loss (LSLoss) for cerebral white matter hyperintensities (WMHs) segmentation on fluid‐attenuated inversion recovery images. The training procedure did not require manually labeled WMH masks. Our image preprocessing steps included biased field correction, skull stripping, and white matter segmentation. With the proposed LSLoss, we trained a V‐Net using the MRI images from both local and public databases. Local databases were the small vessel disease cohort (HKU‐SVD, n = 360) and the multiple sclerosis cohort (HKU‐MS, n = 20) from our institutional imaging center. Public databases were the Medical Image Computing Computer‐assisted Intervention (MICCAI) WMH challenge database (MICCAI‐WMH, n = 60) and the normal control cohort of the Alzheimer's Disease Neuroimaging Initiative database (ADNI‐CN, n = 15). We achieved an overall dice similarity coefficient (DSC) of 0.81 on the HKU‐SVD testing set (n = 20), DSC = 0.77 on the HKU‐MS testing set (n = 5), and DSC = 0.78 on MICCAI‐WMH testing set (n = 30). The segmentation results obtained by our semisupervised V‐Net were comparable with the supervised methods and outperformed the unsupervised methods in the literature. John Wiley & Sons, Inc. 2022-10-10 /pmc/articles/PMC9921214/ /pubmed/36214210 http://dx.doi.org/10.1002/hbm.26109 Text en © 2022 The Authors. Human Brain Mapping published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Huang, Fan Xia, Peng Vardhanabhuti, Varut Hui, Sai‐Kam Lau, Kui‐Kai Ka‐Fung Mak, Henry Cao, Peng Semisupervised white matter hyperintensities segmentation on MRI |
title | Semisupervised white matter hyperintensities segmentation on MRI |
title_full | Semisupervised white matter hyperintensities segmentation on MRI |
title_fullStr | Semisupervised white matter hyperintensities segmentation on MRI |
title_full_unstemmed | Semisupervised white matter hyperintensities segmentation on MRI |
title_short | Semisupervised white matter hyperintensities segmentation on MRI |
title_sort | semisupervised white matter hyperintensities segmentation on mri |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9921214/ https://www.ncbi.nlm.nih.gov/pubmed/36214210 http://dx.doi.org/10.1002/hbm.26109 |
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