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Effects of Date Palm Waste Compost Application on Root Proteome Changes of Barley (Hordeum vulgare L.)
Proteomic analysis was performed to investigate the differentially abundant proteins (DAPs) in barley roots during the tillering stage. Bioinformatic tools were used to interpret the biological function, the pathway analysis and the visualisation of the network amongst the identified proteins. A tot...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9921465/ https://www.ncbi.nlm.nih.gov/pubmed/36771612 http://dx.doi.org/10.3390/plants12030526 |
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author | Ghouili, Emna Sassi, Khaled Hidri, Yassine M’Hamed, Hatem Cheikh Somenahally, Anil Xue, Qingwu Jebara, Moez Nefissi Ouertani, Rim Riahi, Jouhaina de Oliveira, Ana Caroline Abid, Ghassen Muhovski, Yordan |
author_facet | Ghouili, Emna Sassi, Khaled Hidri, Yassine M’Hamed, Hatem Cheikh Somenahally, Anil Xue, Qingwu Jebara, Moez Nefissi Ouertani, Rim Riahi, Jouhaina de Oliveira, Ana Caroline Abid, Ghassen Muhovski, Yordan |
author_sort | Ghouili, Emna |
collection | PubMed |
description | Proteomic analysis was performed to investigate the differentially abundant proteins (DAPs) in barley roots during the tillering stage. Bioinformatic tools were used to interpret the biological function, the pathway analysis and the visualisation of the network amongst the identified proteins. A total of 72 DAPs (33 upregulated and 39 downregulated) among a total of 2580 proteins were identified in response to compost treatment, suggesting multiple pathways of primary and secondary metabolism, such as carbohydrates and energy metabolism, phenylpropanoid pathway, glycolysis pathway, protein synthesis and degradation, redox homeostasis, RNA processing, stress response, cytoskeleton organisation, and phytohormone metabolic pathways. The expression of DAPs was further validated by qRT-PCR. The effects on barley plant development, such as the promotion of root growth and biomass increase, were associated with a change in energy metabolism and protein synthesis. The activation of enzymes involved in redox homeostasis and the regulation of stress response proteins suggest a protective effect of compost, consequently improving barley growth and stress acclimation through the reduction of the environmental impact of productive agriculture. Overall, these results may facilitate a better understanding of the molecular mechanism of compost-promoted plant growth and provide valuable information for the identification of critical genes/proteins in barley as potential targets of compost. |
format | Online Article Text |
id | pubmed-9921465 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-99214652023-02-12 Effects of Date Palm Waste Compost Application on Root Proteome Changes of Barley (Hordeum vulgare L.) Ghouili, Emna Sassi, Khaled Hidri, Yassine M’Hamed, Hatem Cheikh Somenahally, Anil Xue, Qingwu Jebara, Moez Nefissi Ouertani, Rim Riahi, Jouhaina de Oliveira, Ana Caroline Abid, Ghassen Muhovski, Yordan Plants (Basel) Article Proteomic analysis was performed to investigate the differentially abundant proteins (DAPs) in barley roots during the tillering stage. Bioinformatic tools were used to interpret the biological function, the pathway analysis and the visualisation of the network amongst the identified proteins. A total of 72 DAPs (33 upregulated and 39 downregulated) among a total of 2580 proteins were identified in response to compost treatment, suggesting multiple pathways of primary and secondary metabolism, such as carbohydrates and energy metabolism, phenylpropanoid pathway, glycolysis pathway, protein synthesis and degradation, redox homeostasis, RNA processing, stress response, cytoskeleton organisation, and phytohormone metabolic pathways. The expression of DAPs was further validated by qRT-PCR. The effects on barley plant development, such as the promotion of root growth and biomass increase, were associated with a change in energy metabolism and protein synthesis. The activation of enzymes involved in redox homeostasis and the regulation of stress response proteins suggest a protective effect of compost, consequently improving barley growth and stress acclimation through the reduction of the environmental impact of productive agriculture. Overall, these results may facilitate a better understanding of the molecular mechanism of compost-promoted plant growth and provide valuable information for the identification of critical genes/proteins in barley as potential targets of compost. MDPI 2023-01-23 /pmc/articles/PMC9921465/ /pubmed/36771612 http://dx.doi.org/10.3390/plants12030526 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ghouili, Emna Sassi, Khaled Hidri, Yassine M’Hamed, Hatem Cheikh Somenahally, Anil Xue, Qingwu Jebara, Moez Nefissi Ouertani, Rim Riahi, Jouhaina de Oliveira, Ana Caroline Abid, Ghassen Muhovski, Yordan Effects of Date Palm Waste Compost Application on Root Proteome Changes of Barley (Hordeum vulgare L.) |
title | Effects of Date Palm Waste Compost Application on Root Proteome Changes of Barley (Hordeum vulgare L.) |
title_full | Effects of Date Palm Waste Compost Application on Root Proteome Changes of Barley (Hordeum vulgare L.) |
title_fullStr | Effects of Date Palm Waste Compost Application on Root Proteome Changes of Barley (Hordeum vulgare L.) |
title_full_unstemmed | Effects of Date Palm Waste Compost Application on Root Proteome Changes of Barley (Hordeum vulgare L.) |
title_short | Effects of Date Palm Waste Compost Application on Root Proteome Changes of Barley (Hordeum vulgare L.) |
title_sort | effects of date palm waste compost application on root proteome changes of barley (hordeum vulgare l.) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9921465/ https://www.ncbi.nlm.nih.gov/pubmed/36771612 http://dx.doi.org/10.3390/plants12030526 |
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