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A spectral method for assessing and combining multiple data visualizations
Dimension reduction is an indispensable part of modern data science, and many algorithms have been developed. However, different algorithms have their own strengths and weaknesses, making it important to evaluate their relative performance, and to leverage and combine their individual strengths. Thi...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9922271/ https://www.ncbi.nlm.nih.gov/pubmed/36774377 http://dx.doi.org/10.1038/s41467-023-36492-2 |
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author | Ma, Rong Sun, Eric D. Zou, James |
author_facet | Ma, Rong Sun, Eric D. Zou, James |
author_sort | Ma, Rong |
collection | PubMed |
description | Dimension reduction is an indispensable part of modern data science, and many algorithms have been developed. However, different algorithms have their own strengths and weaknesses, making it important to evaluate their relative performance, and to leverage and combine their individual strengths. This paper proposes a spectral method for assessing and combining multiple visualizations of a given dataset produced by diverse algorithms. The proposed method provides a quantitative measure – the visualization eigenscore – of the relative performance of the visualizations for preserving the structure around each data point. It also generates a consensus visualization, having improved quality over individual visualizations in capturing the underlying structure. Our approach is flexible and works as a wrapper around any visualizations. We analyze multiple real-world datasets to demonstrate the effectiveness of the method. We also provide theoretical justifications based on a general statistical framework, yielding several fundamental principles along with practical guidance. |
format | Online Article Text |
id | pubmed-9922271 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-99222712023-02-13 A spectral method for assessing and combining multiple data visualizations Ma, Rong Sun, Eric D. Zou, James Nat Commun Article Dimension reduction is an indispensable part of modern data science, and many algorithms have been developed. However, different algorithms have their own strengths and weaknesses, making it important to evaluate their relative performance, and to leverage and combine their individual strengths. This paper proposes a spectral method for assessing and combining multiple visualizations of a given dataset produced by diverse algorithms. The proposed method provides a quantitative measure – the visualization eigenscore – of the relative performance of the visualizations for preserving the structure around each data point. It also generates a consensus visualization, having improved quality over individual visualizations in capturing the underlying structure. Our approach is flexible and works as a wrapper around any visualizations. We analyze multiple real-world datasets to demonstrate the effectiveness of the method. We also provide theoretical justifications based on a general statistical framework, yielding several fundamental principles along with practical guidance. Nature Publishing Group UK 2023-02-11 /pmc/articles/PMC9922271/ /pubmed/36774377 http://dx.doi.org/10.1038/s41467-023-36492-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Ma, Rong Sun, Eric D. Zou, James A spectral method for assessing and combining multiple data visualizations |
title | A spectral method for assessing and combining multiple data visualizations |
title_full | A spectral method for assessing and combining multiple data visualizations |
title_fullStr | A spectral method for assessing and combining multiple data visualizations |
title_full_unstemmed | A spectral method for assessing and combining multiple data visualizations |
title_short | A spectral method for assessing and combining multiple data visualizations |
title_sort | spectral method for assessing and combining multiple data visualizations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9922271/ https://www.ncbi.nlm.nih.gov/pubmed/36774377 http://dx.doi.org/10.1038/s41467-023-36492-2 |
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