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AFM negatively regulates the infiltration of monocytes to mediate sepsis-associated acute kidney injury
BACKGROUND: Sepsis is organ dysfunction due to the host’s deleterious response to infection, and the kidneys are one of the organs damaged in common sepsis. Sepsis-associated acute kidney injury (SA-AKI) increases the mortality in patients with sepsis. Although a substantial volume of research has i...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9922996/ https://www.ncbi.nlm.nih.gov/pubmed/36793712 http://dx.doi.org/10.3389/fimmu.2023.1049536 |
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author | Guo, Caiyun Fan, Youling Cheng, Jiurong Deng, Yingdong Zhang, Xiangsheng Chen, Yanna Jing, Huan Li, Wenjun Liu, Pei Xie, Jiaqi Ning, Wenjun Chen, Hongtao Zhou, Jun |
author_facet | Guo, Caiyun Fan, Youling Cheng, Jiurong Deng, Yingdong Zhang, Xiangsheng Chen, Yanna Jing, Huan Li, Wenjun Liu, Pei Xie, Jiaqi Ning, Wenjun Chen, Hongtao Zhou, Jun |
author_sort | Guo, Caiyun |
collection | PubMed |
description | BACKGROUND: Sepsis is organ dysfunction due to the host’s deleterious response to infection, and the kidneys are one of the organs damaged in common sepsis. Sepsis-associated acute kidney injury (SA-AKI) increases the mortality in patients with sepsis. Although a substantial volume of research has improved the prevention and treatment of the disease, SA-SKI is still a significant clinical concern. PURPOSE: Aimed to use weighted gene co-expression network analysis (WGCNA) and immunoinfiltration analysis to study SA-AKI-related diagnostic markers and potential therapeutic targets. METHODS: Immunoinfiltration analysis was performed on SA-AKI expression datasets from the Gene Expression Synthesis (GEO) database. A weighted gene co-expression network analysis (WGCNA) analysis was performed on immune invasion scores as trait data, and modules associated with immune cells of interest were identified as hub modules. Screening hub geneset in the hub module using protein-protein interaction (PPI) network analysis. The hub gene was identified as a target by intersecting with significantly different genes screened by differential expression analysis and validated using two external datasets. Finally, the correlation between the target gene, SA-AKI, and immune cells was verified experimentally. RESULTS: Green modules associated with monocytes were identified using WGCNA and immune infiltration analysis. Differential expression analysis and PPI network analysis identified two hub genes (AFM and GSTA1). Further validation using additional AKI datasets GSE30718 and GSE44925 showed that AFM was significantly downregulated in AKI samples and correlated with the development of AKI. The correlation analysis of hub genes and immune cells showed that AFM was significantly associated with monocyte infiltration and hence, selected as a critical gene. In addition, Gene single-enrichment analysis (GSEA) and PPI analyses results showed that AFM was significantly related to the occurrence and development of SA-AKI. CONCLUSIONS: AFM is inversely correlated with the recruitment of monocytes and the release of various inflammatory factors in the kidneys of AKI. AFM can be a potential biomarker and therapeutic target for monocyte infiltration in sepsis-related AKI. |
format | Online Article Text |
id | pubmed-9922996 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99229962023-02-14 AFM negatively regulates the infiltration of monocytes to mediate sepsis-associated acute kidney injury Guo, Caiyun Fan, Youling Cheng, Jiurong Deng, Yingdong Zhang, Xiangsheng Chen, Yanna Jing, Huan Li, Wenjun Liu, Pei Xie, Jiaqi Ning, Wenjun Chen, Hongtao Zhou, Jun Front Immunol Immunology BACKGROUND: Sepsis is organ dysfunction due to the host’s deleterious response to infection, and the kidneys are one of the organs damaged in common sepsis. Sepsis-associated acute kidney injury (SA-AKI) increases the mortality in patients with sepsis. Although a substantial volume of research has improved the prevention and treatment of the disease, SA-SKI is still a significant clinical concern. PURPOSE: Aimed to use weighted gene co-expression network analysis (WGCNA) and immunoinfiltration analysis to study SA-AKI-related diagnostic markers and potential therapeutic targets. METHODS: Immunoinfiltration analysis was performed on SA-AKI expression datasets from the Gene Expression Synthesis (GEO) database. A weighted gene co-expression network analysis (WGCNA) analysis was performed on immune invasion scores as trait data, and modules associated with immune cells of interest were identified as hub modules. Screening hub geneset in the hub module using protein-protein interaction (PPI) network analysis. The hub gene was identified as a target by intersecting with significantly different genes screened by differential expression analysis and validated using two external datasets. Finally, the correlation between the target gene, SA-AKI, and immune cells was verified experimentally. RESULTS: Green modules associated with monocytes were identified using WGCNA and immune infiltration analysis. Differential expression analysis and PPI network analysis identified two hub genes (AFM and GSTA1). Further validation using additional AKI datasets GSE30718 and GSE44925 showed that AFM was significantly downregulated in AKI samples and correlated with the development of AKI. The correlation analysis of hub genes and immune cells showed that AFM was significantly associated with monocyte infiltration and hence, selected as a critical gene. In addition, Gene single-enrichment analysis (GSEA) and PPI analyses results showed that AFM was significantly related to the occurrence and development of SA-AKI. CONCLUSIONS: AFM is inversely correlated with the recruitment of monocytes and the release of various inflammatory factors in the kidneys of AKI. AFM can be a potential biomarker and therapeutic target for monocyte infiltration in sepsis-related AKI. Frontiers Media S.A. 2023-01-30 /pmc/articles/PMC9922996/ /pubmed/36793712 http://dx.doi.org/10.3389/fimmu.2023.1049536 Text en Copyright © 2023 Guo, Fan, Cheng, Deng, Zhang, Chen, Jing, Li, Liu, Xie, Ning, Chen and Zhou https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Guo, Caiyun Fan, Youling Cheng, Jiurong Deng, Yingdong Zhang, Xiangsheng Chen, Yanna Jing, Huan Li, Wenjun Liu, Pei Xie, Jiaqi Ning, Wenjun Chen, Hongtao Zhou, Jun AFM negatively regulates the infiltration of monocytes to mediate sepsis-associated acute kidney injury |
title | AFM negatively regulates the infiltration of monocytes to mediate sepsis-associated acute kidney injury |
title_full | AFM negatively regulates the infiltration of monocytes to mediate sepsis-associated acute kidney injury |
title_fullStr | AFM negatively regulates the infiltration of monocytes to mediate sepsis-associated acute kidney injury |
title_full_unstemmed | AFM negatively regulates the infiltration of monocytes to mediate sepsis-associated acute kidney injury |
title_short | AFM negatively regulates the infiltration of monocytes to mediate sepsis-associated acute kidney injury |
title_sort | afm negatively regulates the infiltration of monocytes to mediate sepsis-associated acute kidney injury |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9922996/ https://www.ncbi.nlm.nih.gov/pubmed/36793712 http://dx.doi.org/10.3389/fimmu.2023.1049536 |
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