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DeepStruc: towards structure solution from pair distribution function data using deep generative models
Structure solution of nanostructured materials that have limited long-range order remains a bottleneck in materials development. We present a deep learning algorithm, DeepStruc, that can solve a simple monometallic nanoparticle structure directly from a Pair Distribution Function (PDF) obtained from...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
RSC
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9923795/ https://www.ncbi.nlm.nih.gov/pubmed/36798882 http://dx.doi.org/10.1039/d2dd00086e |
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author | Kjær, Emil T. S. Anker, Andy S. Weng, Marcus N. Billinge, Simon J. L. Selvan, Raghavendra Jensen, Kirsten M. Ø. |
author_facet | Kjær, Emil T. S. Anker, Andy S. Weng, Marcus N. Billinge, Simon J. L. Selvan, Raghavendra Jensen, Kirsten M. Ø. |
author_sort | Kjær, Emil T. S. |
collection | PubMed |
description | Structure solution of nanostructured materials that have limited long-range order remains a bottleneck in materials development. We present a deep learning algorithm, DeepStruc, that can solve a simple monometallic nanoparticle structure directly from a Pair Distribution Function (PDF) obtained from total scattering data by using a conditional variational autoencoder. We first apply DeepStruc to PDFs from seven different structure types of monometallic nanoparticles, and show that structures can be solved from both simulated and experimental PDFs, including PDFs from nanoparticles that are not present in the training distribution. We also apply DeepStruc to a system of hcp, fcc and stacking faulted nanoparticles, where DeepStruc recognizes stacking faulted nanoparticles as an interpolation between hcp and fcc nanoparticles and is able to solve stacking faulted structures from PDFs. Our findings suggests that DeepStruc is a step towards a general approach for structure solution of nanomaterials. |
format | Online Article Text |
id | pubmed-9923795 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | RSC |
record_format | MEDLINE/PubMed |
spelling | pubmed-99237952023-02-14 DeepStruc: towards structure solution from pair distribution function data using deep generative models Kjær, Emil T. S. Anker, Andy S. Weng, Marcus N. Billinge, Simon J. L. Selvan, Raghavendra Jensen, Kirsten M. Ø. Digit Discov Chemistry Structure solution of nanostructured materials that have limited long-range order remains a bottleneck in materials development. We present a deep learning algorithm, DeepStruc, that can solve a simple monometallic nanoparticle structure directly from a Pair Distribution Function (PDF) obtained from total scattering data by using a conditional variational autoencoder. We first apply DeepStruc to PDFs from seven different structure types of monometallic nanoparticles, and show that structures can be solved from both simulated and experimental PDFs, including PDFs from nanoparticles that are not present in the training distribution. We also apply DeepStruc to a system of hcp, fcc and stacking faulted nanoparticles, where DeepStruc recognizes stacking faulted nanoparticles as an interpolation between hcp and fcc nanoparticles and is able to solve stacking faulted structures from PDFs. Our findings suggests that DeepStruc is a step towards a general approach for structure solution of nanomaterials. RSC 2022-11-28 /pmc/articles/PMC9923795/ /pubmed/36798882 http://dx.doi.org/10.1039/d2dd00086e Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Kjær, Emil T. S. Anker, Andy S. Weng, Marcus N. Billinge, Simon J. L. Selvan, Raghavendra Jensen, Kirsten M. Ø. DeepStruc: towards structure solution from pair distribution function data using deep generative models |
title | DeepStruc: towards structure solution from pair distribution function data using deep generative models |
title_full | DeepStruc: towards structure solution from pair distribution function data using deep generative models |
title_fullStr | DeepStruc: towards structure solution from pair distribution function data using deep generative models |
title_full_unstemmed | DeepStruc: towards structure solution from pair distribution function data using deep generative models |
title_short | DeepStruc: towards structure solution from pair distribution function data using deep generative models |
title_sort | deepstruc: towards structure solution from pair distribution function data using deep generative models |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9923795/ https://www.ncbi.nlm.nih.gov/pubmed/36798882 http://dx.doi.org/10.1039/d2dd00086e |
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